Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 seq2 82.4 9e-11 >seq6 Length=21794218 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 907226 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 907285 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 907286 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 907345 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 907346 GCTCATCTCCCGCGACGAGGGCCTCCAC 907373 Score = 132 bits (146), Expect = 6e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| | || || || ||||| ||||| ||||||||||| || ||||| Sbjct 6278969 CTTCGCCGAGCGCCTCGTTGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCGGGCTCCTT 6278910 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||| |||||||| || || ||||| || ||| ||||||||||| Sbjct 6278909 CTGCGCCATCTTCTGGCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAACGA 6278850 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 6278849 GCTCATCTCCCGCGACGAGGGCCTGCAC 6278822 Score = 105 bits (116), Expect = 8e-18 Identities = 249/370 (67%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| || || || | || | ||| ||| ||||||||| | | || || || || Sbjct 19066372 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCTCTGTTGGTGGCAGCA 19066431 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 || |||| || || || | ||||||||||||||||| |||| | || || | | Sbjct 19066432 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 19066491 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCA-CTG-----CGTTGCTTTCCC 9700 || || |||| ||||||||| | ||||||| | ||| | |||| |||| Sbjct 19066492 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCTCTTTGCCTTCCA 19066545 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAA 9759 || ||||| || ||||||| || || ||||| || ||| | | | | ||| ||| Sbjct 19066546 ACAGCATCTATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 19066605 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 ||||| || || || ||| || ||||| ||||||||||||||||| | | | | Sbjct 19066606 -AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAGATCCTG- 19066663 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 | || | || || || ||| || ||| || ||||| || ||| || | |||||||| Sbjct 19066664 ATATCGAGAAAAACGGTACACCAGCTTCTCCTGCAATAGCCTTGGCAAGCAAAGTCTTAC 19066723 Query 9879 CCGTACCTGG 9888 | || || || Sbjct 19066724 CAGTTCCAGG 19066733 Score = 93.3 bits (102), Expect = 5e-14 Identities = 275/415 (66%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | || || ||||| |||||| | || || | ||| | || || ||| Sbjct 21503595 CGATCGAACCTCCCAGGCCGAAGAAGCGCGGCGTCCAGCACATCGGGCCTGTTTGTGGCG 21503654 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| |||| | ||| |||| | |||| ||||||||||| |||| || |||| Sbjct 21503655 GCGAGCACAATGACACCACTGTTGCCGG--CAAATCCATCCATCTCCGTCAGGAGCTGGT 21503712 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 | || || || |||| ||||| || | || | | | || |||| || ||| | || Sbjct 21503713 TGATGGTCTGCTCCCTCTCATCGTTTCC--GCCTCCGAGCCCCGCACCACGCTGCCTCCC 21503770 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 ||||| || |||||||| ||||| || ||||| || ||| || || | | Sbjct 21503771 GACGGCGTCGATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTGGCCTTC----T 21503826 Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | || || |||| ||| || | ||||| ||||| || || | ||| || || | | Sbjct 21503827 CGAACAGGTCCC--TCACCCTGGACGCGCCGACACCGACGAAGAGCTCGACGAACTCCGA 21503884 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 ||||| || || |||||| || | || || || | ||| || || || || || Sbjct 21503885 GGCGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGCGT 21503944 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 ||| ||||| || ||| || |||||| |||| | | | || |||||||| || Sbjct 21503945 CTTCCCCGTGCCGGGCGGGCCAACGAGGA-GGCATCCCTTGGGGATCTTGGCCCC 21503998 >seq2 Length=27082872 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 105136 AACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGC 105195 || |||||| | ||| || || | | | ||||||| |||| ||| || ||||||||||| Sbjct 25697089 AATTGTCACAAGAAATCTCAATAAAATAATTGATACTAATTATTATCCTGTTGAGACTGC 25697148 Query 105196 TCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGT 105255 | ||| |||||||| ||| | |||||||| | ||||||||||| | || || Sbjct 25697149 AAAGAGATCAAATATGAGGCACAGGCCAATTGGAATTGGTGTTCAGGGCTTGGCAGACAC 25697208 Query 105256 ATTCATTCTTTGTCGCCACGCATTTGATTC 105285 |||||| | | || ||||||||||| Sbjct 25697209 TTTCATTTTACTTGGCATGGCATTTGATTC 25697238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242638716840