Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 206 3e-48 >seq6 Length=21794218 Score = 206 bits (228), Expect = 3e-48 Identities = 581/875 (66%), Gaps = 33/875 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || ||||||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 6279382 TTCCCCATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGG 6279323 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTAC 59678 | | ||||||| | |||||| || ||| | | |||||| ||| | Sbjct 6279322 ACGGCCGAGGAGGTCGACCTCTCCTCCGACGCGCGCCACTGGGACGCCGCGCTGTCCCCC 6279263 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || |||||||||||||||||| || || || ||| Sbjct 6279262 GACGAGCGCCACTTCATCTCCCACGTGCTGGCCTTCTTCGCGGCGTCGGACGGCATCGTG 6279203 Query 59739 ATGGAAAATATAGA---CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | || | | | ||| || || ||| | |||||||| || | Sbjct 6279202 CTCGAGAACCTCGCGTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCACGCGCC 6279146 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| |||||||| |||| ||||||||| || | Sbjct 6279145 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 6279087 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| |||||||| || Sbjct 6279086 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATAGACACCGT 6279027 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCA 59972 |||||| || | || || || |||||||||| ||||| || | | |||| Sbjct 6279026 CCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC-- 6278969 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || || || || || ||||||||||| ||||| ||| Sbjct 6278968 TTCGCCGAGCGCCTCGTTGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 6278909 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || |||||||| || ||||| ||||| ||||||||||| | |||||||||||| Sbjct 6278908 TGCGCCATCTTCTGGCTAAAGAAGCGCGGCCTAATGCCGGGCCTCACGTTCTCCAACGAG 6278849 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151 || || ||||| ||||||||||| || || || || || | ||||| | ||| Sbjct 6278848 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTACGACCTCCT 6278790 Query 60152 ATTGGAAAAATGCCCTTCCAAG--GATATTCACAAGATTGTT-CAGTGGGCTTGTGAAGT 60208 | || || | | | | | | | |||| ||| | | | | | || | Sbjct 6278789 CCGCGGCAA--GCTCGACGAGGTCCGCGTCCGCGAGATCGTTGCCGACGCCGT-CGACAT 6278733 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 ||||| |||||| || || ||||| || | ||| | || ||| ||| | Sbjct 6278732 CGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCT 6278673 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGCCC--AGTTTGGAGAA 60323 |||| |||||||| |||| ||||| ||||| ||||||||||| | | |||| Sbjct 6278672 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCCCTGGGCTGCAAGAA 6278613 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 | || ||| ||| ||||| ||||||||||||||| |||||| || | || Sbjct 6278612 G-----ATGTACAACGTCGCCAACCCATTCGACTGGATGGAGCTCATCTCCCTGCAGGGC 6278558 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| ||||| || || Sbjct 6278557 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 6278523 Score = 194 bits (214), Expect = 2e-44 Identities = 581/878 (66%), Gaps = 39/878 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || ||||||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 906813 TTCCCCATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGG 906872 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTAC 59678 | | |||||| | |||||| ||| ||| | | |||||| ||| | Sbjct 906873 ACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCCCC 906932 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| ||| |||||| || || |||||||||||||| || || || ||| Sbjct 906933 GACGAGAGGCACTTCATCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGACGGCATCGTG 906992 Query 59739 ATGGAAAATATAGA---CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | || | | | ||| || || ||| | |||||||| || | Sbjct 906993 CTCGAGAACCTCGCGTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCACGCGCC 907049 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| |||||||| |||| ||||||||| || | Sbjct 907050 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 907108 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 907109 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGT 907168 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCA 59972 |||||| || | || || || |||||||||| ||||| || | | |||| Sbjct 907169 CCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC-- 907226 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 907227 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 907286 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| ||||||||||||||||| | |||||||||||| Sbjct 907287 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 907346 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTA 60152 || || ||||| |||||||||||||| || || || || | | |||| | |||| Sbjct 907347 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGC-CTGCCTC-CTATAC-GACCTC 907403 Query 60153 TT----GGAAAAAT--GCCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGA 60205 | || || | | ||| | | | | |||| || | | | | | || Sbjct 907404 CTCCGCGGCAAGCTCGACGAGTCCCGCG---TCCGCGAGATCGTCGCCGACGCCGT-CGA 907459 Query 60206 AGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGG 60265 | ||||| || ||| || || ||||| || | ||| | || ||| ||| | Sbjct 907460 CATCGAGAGGGAATTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGA 907519 Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATG--GCCCAGTTTGGA 60320 |||| |||||||| |||| ||||| |||||| |||||| || | | | | Sbjct 907520 CCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGCTGCAA 907579 Query 60321 GAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAA 60380 |||| || ||| || ||||| ||||||||||||||| |||||| || | Sbjct 907580 GAAG-----ATGTACAAGGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAG 907634 Query 60381 GGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || |||||||||||||| |||||||| ||||| || || Sbjct 907635 GGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 907672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548507720309040