Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 seq7 93.3 5e-14 seq1 93.3 5e-14 seq10 91.5 2e-13 seq12 89.7 6e-13 seq3 89.7 6e-13 >seq6 Length=21794218 Score = 141 bits (156), Expect = 1e-28 Identities = 290/420 (69%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || |||| ||||| ||||| || || |||||||| | ||| |||||||| ||| Sbjct 6278850 TCGTTGGAGAACGTGAGGCCCGGCATTAGGCCGCGCTTCTTTAGCCAGAAGATGGCGCAG 6278909 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| || |||||||||||| |||||||| || ||||| || ||||| | ||||| Sbjct 6278910 AAGGAGCCCGAGAAGAAGATGCCCTCGACACAGGCGAAGGCAACGAGGCGCTCGGCGAA- 6278968 Query 74910 GGTGCATCG--GAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG 74966 | || ||| | ||| ||||| | ||||| || || || || || || ||| Sbjct 6278969 -GCGC-TCGCCGCCGTCGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGG 6279026 Query 74967 ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCA 75026 || || || || || ||||||||| ||||||| || || || | | || Sbjct 6279027 ACGGTGTCTATGGCGCGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATGTAGGTCTCG 6279086 Query 75027 ATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAA 75085 | || || |||||| ||||||| || || |||| || ||| |||| | ||||||| Sbjct 6279087 AGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAA 6279145 Query 75086 AGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATG 75143 | || ||||| || | ||| || || || || | | | ||| ||||| | Sbjct 6279146 GGCGCGTGCCTCGGCGACCTGCACGTCGGACATG-AACCTGGACG-CGAGGTTCTCGAGC 6279203 Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 |||||||||||||| || ||||| || ||||| || ||| ||||||||||| ||| Sbjct 6279204 ACGATGCCGTCCGACGCCGCGAAGAAGGCCAGCACGTGGGAGATGAAGTGGCGCTCGTCG 6279263 Score = 123 bits (136), Expect = 3e-23 Identities = 262/380 (69%), Gaps = 12/380 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 907330 AGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 907271 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || || |||||||| ||||| | ||||| | || ||| | | Sbjct 907270 AAGATCCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA--GCGC-TCGCCGCCG 907214 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 907213 TCGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGCG 907154 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| ||||||| || || || | | || | || || |||||| Sbjct 907153 CGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTAC 907094 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | ||||||| | || ||||| || Sbjct 907093 ATCTCCGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGGC 907035 Query 75101 AATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 | ||| || || |||| | | | ||| ||||| | ||||||||||| ||| Sbjct 907034 GACCTGCACGTCGGACATGAACC-TGGACG-CGAGGTTCTCGAGCACGATGCCGTCGGAG 906977 Query 75159 GCGGCGAAAAAAGCCAGTAC 75178 || ||||| || || || || Sbjct 906976 GCCGCGAAGAAGGCGAGCAC 906957 >seq7 Length=18603524 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1067604 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1067545 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1067544 TGAGCTACGAAAGCAA 1067529 >seq1 Length=33916305 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1266991 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1266932 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1266931 TGAGCTACGAAAGCAA 1266916 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 24849323 CTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 24849264 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 24849263 CTGAGCTACGAAAGC 24849249 >seq10 Length=14643570 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 336681 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 336622 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 336621 TGAGCTACGAAAGCTAA 336605 >seq12 Length=15318893 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2584065 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2584124 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 2584125 TGAGCTACGAAAGC 2584138 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 14934545 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 14934604 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 14934605 TGAGCTACGAAAGC 14934618 >seq3 Length=29620734 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 6042347 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6042406 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 6042407 TGAGCTACGAAAGC 6042420 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 26102346 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 26102405 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 26102406 TGAGCTACGAAAGC 26102419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198961061800