Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6 118 7e-22 seq2 100 2e-16 seq4 96.9 2e-15 seq5 95.1 8e-15 seq1 95.1 8e-15 >seq6 Length=21794218 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||||||||| ||| |||||| || ||||| ||||| | ||| || ||| Sbjct 19646844 AGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCGC 19646785 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || |||||||| || | |||||| |||||||| || | |||||| Sbjct 19646784 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCC 19646725 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| | ||| || |||| ||| Sbjct 19646724 TTGTCCTGGATC-TTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAAGGT 19646666 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || ||||| |||||||| Sbjct 19646665 GATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 19646627 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || || ||||||||||| || || | || ||||| ||||| |||||||| Sbjct 19269449 CTCCTTCTGGATATTATAATCTGAGAGGAGGCGGCCATCCTCAAGCTGTTTCCCGGCAAA 19269508 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || ||||| | ||||| || | ||||||||||| ||| ||| | || || Sbjct 19269509 GATCAAGCGCTGCTCATCCGGTGGAATGCCCTCCTTGTCCTGGAT-TTTGGCCTTGACAT 19269567 Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| || ||| | ||| || || | ||| || ||||| ||||| | || |||| Sbjct 19269568 TATCAATAGTATCTGAGGACTCAACCTCAAGGGTGATGGTTTTCCCGGTGAGAGTCTTCA 19269627 Query 34694 CAAAAATCTGCAT 34706 |||| |||||||| Sbjct 19269628 CAAAGATCTGCAT 19269640 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || | || ||||| || || ||| |||||| || ||||| || || | Sbjct 19645941 CCTCCCCTGAGCCTCAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 19645882 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| || || || || || || | |||||| ||||| || || Sbjct 19645881 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGA 19645822 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | ||| ||| | ||| || || | |||||| Sbjct 19645821 ATGCCCTCCTTGTCCTGGATC-TTGGCTTTGACGTTGTCAATGGTATCCGAGGACTCCAC 19645763 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || ||||||||||||||||| Sbjct 19645762 CTCAAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAAATCTGCAT 19645715 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||||| ||| ||||| || ||||| || || | ||||| || | || || Sbjct 19646608 CACCAGGTGGAGGGTGGATTCCTTCTGTATGTTGTAGTCAGCCAGTGTGCGGCCATCCTC 19646549 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || || |||||||| || | |||||| |||||||| || | ||||||||||| Sbjct 19646548 GAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 19646489 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||| || | || ||| | ||| ||||| | ||| || || | || || || | Sbjct 19646488 GATC-TTGGCCTTCACGTTGTCAATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCT 19646430 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | || || || || ||||||||| Sbjct 19646429 TGCCAGTAAGGGTCTTGACGAAGATCTGCATG 19646398 >seq2 Length=27082872 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| || ||||| || || | || || || Sbjct 2372847 AGACGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGG 2372906 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 2372907 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATCCCCTCC 2372966 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || || ||| ||||| |||||| ||||||| || Sbjct 2372967 TTGTCCTGGATC-TTGGCCTTCACATTATCAATGGTGTCCGAGCTCTCAACTTCCAAAGT 2373025 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || |||||||| |||||||| Sbjct 2373026 GATGGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 2373064 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || ||||||||| ||||| || || | ||| || | |||| || || || Sbjct 2374002 TGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGGGTCCTGCCGTCCTCCAGCTGC 2374061 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | |||||| || ||||| || | ||||||||||| |||| || Sbjct 2374062 TTGCCGGCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATC-TT 2374120 Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| || || ||||| |||||| || | ||| || || || ||||| Sbjct 2374121 AGCCTTGACGTTATCGATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 2374180 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || |||||||| |||||||| Sbjct 2374181 CAGTGTCTTCACAAAGATCTGCAT 2374204 >seq4 Length=21479432 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || |||||||| |||| |||||| ||| | || ||||| || || ||||| ||| Sbjct 18578373 TCCTTCTGGATGTTATAGTCTGCAAGTGTACGCCCATCCTCAAGCTGCTTGCCGGCGAAT 18578314 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | |||||| ||||| || || | |||||||||||| |||| || | || || | Sbjct 18578313 ATAAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATC-TTAGCCTTCACATT 18578255 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| || || | ||| || |||| ||| || || || || || | || || || Sbjct 18578254 GTCAATCGTATCGGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAAC 18578195 Query 34695 AAAAATCTGCAT 34706 || |||||||| Sbjct 18578194 GAATATCTGCAT 18578183 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || |||||||| |||| ||| || || | || || || || || || ||||| Sbjct 18578602 CTCCTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 18578543 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | |||||| ||||| || || | |||||||||||| |||| || | || || Sbjct 18578542 GATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATC-TTGGCCTTCACAT 18578484 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||||||||| ||| || || | ||| || || || || || | || |||| Sbjct 18578483 TGTCTATTGTGTCTGACGACTCGACCTCTAGGGTAATTGTCTTGCCAGTGAGGGTCTTCA 18578424 Query 34694 CAAAAATCTGCATG 34707 | || ||||||||| Sbjct 18578423 CGAAGATCTGCATG 18578410 >seq5 Length=20131956 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || || | ||||| ||||| || |||||| || ||||| || || | Sbjct 2692006 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 2691947 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | ||||| |||||||||| Sbjct 2691946 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 2691887 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| | || ||||| | |||| Sbjct 2691886 GGATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCC 2691828 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || |||| || || || || || || | || ||||| || |||||||| ||| Sbjct 2691827 ACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 2691774 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| |||||| || ||||| || || | || || | |||| || || ||| Sbjct 16284209 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTCCTGCCGTCCTCGAGCTGT 16284150 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | |||||| |||||||| || | ||||||||||| |||| || Sbjct 16284149 TTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATC-TT 16284091 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || ||||| | ||| || || | |||||| || | ||| || || || || || Sbjct 16284090 TGCCTTAACATTGTCAATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTTCCAGT 16284031 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| || |||||| Sbjct 16284030 CAAGGTCTTGACAAAGATTTGCATG 16284006 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| ||||| ||| |||||| |||||||| || || | || || | Sbjct 16283996 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTG 16283937 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | ||| || ||||| || || | |||||| Sbjct 16283936 CCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCTGGGGGGATCCCCTCC 16283877 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| ||||| | ||| || || | ||| Sbjct 16283876 TTGTCCTGGATC-TTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGGGT 16283818 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || || | || |||||||| |||||||| Sbjct 16283817 TATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 16283779 >seq1 Length=33916305 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || || | ||||| ||||| || |||||| || ||||| || || | Sbjct 9799248 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 9799307 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | ||||| |||||||||| Sbjct 9799308 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 9799367 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| | || ||||| | |||| Sbjct 9799368 GGATCCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCC 9799426 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || |||| || || || || || || | || ||||| || |||||||| ||| Sbjct 9799427 ACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 9799480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314720045104403