Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 136 3e-27 seq5 104 2e-17 seq6 100 2e-16 seq4 100 2e-16 seq1 89.7 4e-13 >seq2 Length=27082872 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| |||| || || || ||||| |||| Sbjct 2374204 ATGCAGATCTTTGTGAAGACACTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCT 2374145 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || ||||| || || ||||| Sbjct 2374144 GACACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 2374085 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || |||| ||| | |||| || | || |||||| Sbjct 2374084 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCGGACTACAAC 2374025 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || | || | || | || |||||||| Sbjct 2374024 ATCCAAAAGGAGTCAACCCTCCACCTTGTCCTCCGCCTCCGTGGTGGCAT 2373975 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || ||||| |||||||| |||||| |||| || || || ||||| | || Sbjct 2373977 CATGCAGATCTTCGTAAAGACTCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTC 2373918 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || || || ||||| || ||||| || || ||||| Sbjct 2373917 TGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 2373858 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || |||| || | |||| | | || ||||| Sbjct 2373857 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTGGCTGACTACAA 2373798 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | ||| | || | || |||||||| Sbjct 2373797 CATCCAGAAGGAGTCGACCCTTCACCTTGTTCTCCGCCTCCGTGGTGGCAT 2373747 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||||||| |||| || ||||| ||||| | || Sbjct 2373521 CATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTC 2373462 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| |||||||| || || || || Sbjct 2373461 TGACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCA 2373402 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||| || | || || | |||| || | || || || Sbjct 2373401 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACCCTTGCTGACTATAA 2373342 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || |||| | ||| | || ||||| || Sbjct 2373341 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTCCGTGGTGGTAT 2373291 >seq5 Length=20131956 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| || || | ||| Sbjct 16283779 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTTGAGGTTGAGTCCTCC 16283838 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || || || || || || || Sbjct 16283839 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCAGACCAG 16283898 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| ||||| || | || || | |||| | | || |||||| Sbjct 16283899 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACCCTGGCTGACTACAAC 16283958 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || |||| | || | ||||| ||||| Sbjct 16283959 ATTCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCCGGGGAGGCAT 16284008 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || |||| || ||| | || || ||||| ||||| | || Sbjct 16284006 CATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTTGAGGTGGAGTCCTC 16284065 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || ||| || || ||||| || ||||| || || || || Sbjct 16284066 CGATACCATTGACAATGTTAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 16284125 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||||| | || ||| | |||| | | || ||||| Sbjct 16284126 GCAGCGTCTGATCTTTGCCGGCAAACAGCTCGAGGACGGCAGGACCCTAGCTGACTACAA 16284185 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||||||| ||| Sbjct 16284186 CATCCAGAAGGAGTCCACC 16284204 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 2691778 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCG 2691837 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 2691838 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 2691897 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | ||| | |||| |||||| Sbjct 2691898 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 2691957 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 2691958 ATCCAGAAGGAGTCGACCCTCCACCTGGT 2691986 >seq6 Length=21794218 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || | || || || | || Sbjct 19646627 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCG 19646686 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || || || || || || || Sbjct 19646687 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 19646746 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || || | |||| || | ||||||||| Sbjct 19646747 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGGACCCTTGCGGATTACAAC 19646806 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| ||| | |||||||| | || | || |||||| Sbjct 19646807 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTCCGTGGTGGC 19646854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||||||||||| | || || ||||| || || | || Sbjct 19645943 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCG 19646002 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || ||||| || || || || Sbjct 19646003 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 19646062 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || | ||| | | || |||||| Sbjct 19646063 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAC 19646122 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || ||||| || ||| Sbjct 19646123 ATCCAGAAGGAATCTACC 19646140 >seq4 Length=21479432 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||||||| | || || | || || || | || Sbjct 18579077 CATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGTCATC 18579136 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || || || ||||| |||||||| || || || || Sbjct 18579137 GGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCA 18579196 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || |||| || | ||| || |||| || || Sbjct 18579197 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTATAA 18579256 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||||||| | || | ||| |||| | || ||||| Sbjct 18579257 CATCCAGAAGGAGTCGACCCTGCACCTTGTTCTGCGCCTCCGTGGTGG 18579304 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || || |||||| | || || | || || || | ||| Sbjct 18578183 ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGTCCTCC 18578242 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || || || || || ||||| || || || || || || || Sbjct 18578243 GATACGATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATCCCTCCAGACCAG 18578302 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| ||||||||| || | || || | || || | || || ||| Sbjct 18578303 CAGCGTCTTATATTCGCCGGCAAGCAGCTTGAGGATGGGCGTACACTTGCAGACTATAAC 18578362 Query 27168 ATTCAAAAGGAGTCGACCTTACA 27190 || || ||||| || ||||| || Sbjct 18578363 ATCCAGAAGGAATCCACCTTGCA 18578385 >seq1 Length=33916305 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 9799476 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCG 9799417 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || || || || Sbjct 9799416 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAG 9799357 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | ||| | |||| |||||| Sbjct 9799356 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 9799297 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 9799296 ATCCAGAAGGAGTCGACCCTCCACCTGGT 9799268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434904857728320