Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq113 140 4e-28 seq8 131 2e-25 seq2 96.9 4e-15 seq1 86.0 8e-12 >seq113 Length=26807 Score = 140 bits (154), Expect = 4e-28 Identities = 204/286 (71%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || || || || ||| || | || ||| | | ||| || || Sbjct 2854 ACCTATAACGATTCACTACCCCTATGAAAAATCAATTACATCGGAGCGTTTCCGGGGGCG 2795 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| || ||||| || ||||| | ||||||||||| Sbjct 2794 AATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGCGTATGCCCTAT 2735 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 ||||||| | ||||||||| | |||| || | | || | |||| || | | Sbjct 2734 AGATCTACCCCTTGTGGATTGGAGATTTGAA-AAGGATATTAAAAGGAAACAATTGCTTA 2676 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || || |||| ||||| || || ||||| || || ||||| || || | Sbjct 2675 ATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCGA 2616 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||||||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 2615 CAAACTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 2570 >seq8 Length=18224760 Score = 131 bits (144), Expect = 2e-25 Identities = 126/160 (79%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 176941 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTC-TTAGACAACTCTGGTAA 176999 ||||| |||||||| ||||| ||||| |||||||| | ||| |||| ||| ||| | Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATTTGTAGTTAGCCAAA---GGTCA 4907442 Query 177000 AGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCA 177059 || || ||| |||| |||||| | |||| ||| || ||||||| |||||| ||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 177060 CGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 ||| |||||||||||||||||||| || ||||| ||| || Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 >seq2 Length=27082872 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 19356 ATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTATC 19415 || |||| ||| ||||| || ||||| | ||||| | ||||| | |||||||||| Sbjct 14044591 ATTCACTTTGAATTTGATAAATGTATTGGTTGTGAAATATGTGTTCGCGTATGCCCTAAA 14044532 Query 19416 AATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAA 19474 ||||||| | ||||||||| | |||| || | | || | |||| || | || Sbjct 14044531 GATCTACCCCTTGTGGATTGGAGATTTGAA-AAGGATATTAAAAGGAAACAATTGCTTAA 14044473 Query 19475 TTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAAC 19534 |||| || || || |||| ||||| || || ||||| || || ||| | || | || Sbjct 14044472 TTATAGTATTGATTTCGGAGTTTGTATATT-TGTGGTAATTGTGTTGAGCACTGTCTGAC 14044414 Query 19535 AAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 ||||||| |||| |||| |||||||||||| | |||| Sbjct 14044413 AAACTGTTTATCAATGATGGAAGAATATGAACTTTCTAC 14044375 >seq1 Length=33916305 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 176439 TTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGT 176498 ||| ||||| || | |||||||| |||| | | || || |||||||||||||| ||| Sbjct 8033869 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 8033810 Query 176499 TGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCA 176558 |||||| ||||| | || | || || | | ||||| | | || || | ||||| Sbjct 8033809 TGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCA 8033750 Query 176559 AGGATCTTTCTCTGATGGTATG 176580 |||| |||||||||||||||| Sbjct 8033749 AGGAAGTTTCTCTGATGGTATG 8033728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603475608693120