Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq5 107 2e-18 seq2 102 7e-17 seq4 100 2e-16 seq1 93.3 4e-14 >seq6 Length=21794218 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||||||| || ||| ||| || || || || ||||| ||||| || || | Sbjct 19646842 GCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTCCGCCC 19646783 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| ||||| || |||||||||||||| | ||| | | ||| || Sbjct 19646782 ATCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTT 19646723 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | ||| || ||||| || |||| |||| Sbjct 19646722 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTCAACCTCCAAGGTGA 19646664 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || |||||||| ||||| Sbjct 19646663 TGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 19646627 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || || || || || || || || | || || Sbjct 19645924 CACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTC 19645865 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || |||||||||||||| | ||| | || ||| |||||| Sbjct 19645864 AAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 19645805 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || ||||| ||| | | | ||||| |||||||| || | ||||| | | Sbjct 19645804 GATCTTGGCTTTGA-CGTTGTCAATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCT 19645746 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGC 39292 | || || || || || ||||| || ||||||| |||| Sbjct 19645745 TGCCGGTGAGTGTCTTCACAAAAATCTGCATCTGCACGC 19645707 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || || || || || || || | || |||||||| ||||| || || Sbjct 19646133 TCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAG 19646074 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | || ||| |||||| ||| || || | ||| Sbjct 19646073 ATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTT 19646015 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | ||| || ||||| || || | |||||| | || || ||||| ||||| || Sbjct 19646014 GTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTTTTGAC 19645955 Query 39273 AAAGATTTGCAT 39284 ||||| ||||| Sbjct 19645954 GAAGATCTGCAT 19645943 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | | | ||| | ||| || ||| || || || || || || || Sbjct 19646401 CATGCCTCCCCTGAGCCTGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 19646342 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || | || |||||||| ||||| || || || |||||||||||||| | Sbjct 19646341 AGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGG 19646282 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || || | ||| | | | ||| || |||| Sbjct 19646281 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCTGAGGACT 19646223 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || | ||||| | ||||| ||||| || || || ||||| ||||| Sbjct 19646222 CGACCTCAAGAGTGATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 19646171 >seq5 Length=20131956 Score = 107 bits (118), Expect = 2e-18 Identities = 173/245 (71%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||||| || | ||| | || | || || ||| ||| || | Sbjct 16284248 ACGAAAATTTG--CATTCCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCT 16284191 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || || || || || | |||| || ||||||||||| ||||| || |||| Sbjct 16284190 GGATGTTGTAGTCAGCTAGGGTCCTGCCGTCCTCGAGCTGTTTGCCGGCAAAGATCAGAC 16284131 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACC 39219 |||||||||| | ||| | || ||| |||||| ||| || || | | | | | | | Sbjct 16284130 GCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT-TGCCTTAACATTGTCAATG 16284072 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 |||||| |||||||| || | ||||| | ||||| |||| || || ||||||||| Sbjct 16284071 GTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATT 16284012 Query 39280 TGCAT 39284 ||||| Sbjct 16284011 TGCAT 16284007 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 2691993 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 2691934 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 2691933 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 2691874 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 2691873 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 2691815 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 2691814 TGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 2691775 >seq2 Length=27082872 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || || || ||||| || | |||| || ||||| ||||| ||||| Sbjct 2374013 CTCCTTTTGGATGTTGTAGTCCGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAA 2374072 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||||||||| || | ||| | || ||| |||||| ||| || |||| | Sbjct 2374073 GATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTT 2374132 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || ||||||||| || | |||||| | || || ||||| || || || Sbjct 2374133 ATCGATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGTGTCTTCAC 2374192 Query 39273 AAAGATTTGCATCT 39286 |||||| ||||||| Sbjct 2374193 AAAGATCTGCATCT 2374206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || ||||| || ||||| || | | || || Sbjct 2373311 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTGCCATCCTC 2373370 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || |||||||||||||| | ||| | || || |||||| Sbjct 2373371 GAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTG 2373430 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | || || |||||||| || | |||||| | || Sbjct 2373431 GATCTTGGCCTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTT 2373490 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 2373491 GCCGGTCAGAGTCTTGACGAAGATCTGCAT 2373520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || || || ||||| || | | || |||||||| ||||| ||||| Sbjct 2373558 TCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAG 2373617 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||||||||||||||| | || | || ||| |||||| ||| || |||| ||| Sbjct 2373618 ATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTT 2373676 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || || || ||||| || | ||||| | || |||||||| || || || Sbjct 2373677 GTCAATGGTGTCAGAAGATTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTGAC 2373736 Query 39273 AAAGATTTGCAT 39284 ||||| ||||| Sbjct 2373737 GAAGATCTGCAT 2373748 >seq4 Length=21479432 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || ||||| || |||||||| || | || |||||||| ||||| || ||| Sbjct 18578373 TCCTTCTGGATGTTATAGTCTGCAAGTGTACGCCCATCCTCAAGCTGCTTGCCGGCGAAT 18578314 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||||||||||||||| | || | | ||| |||||| ||| || || | | Sbjct 18578313 ATAAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTG 18578254 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | ||||||| ||||| || |||| ||||| | || || || || || ||||| Sbjct 18578253 TCAATCGTATCGGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACG 18578194 Query 39274 AAGATTTGCATCT 39286 || || ||||||| Sbjct 18578193 AATATCTGCATCT 18578181 >seq1 Length=33916305 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 9799261 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 9799320 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | | ||| || Sbjct 9799321 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTT 9799380 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 9799381 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 9799439 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 9799440 TGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 9799479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429532559398283