Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 7e-16 seq5 93.3 3e-14 >seq6 Length=21794218 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| || Sbjct 19646399 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACACTTGAGGTCGAGTCCTCG 19646458 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || ||| | || || || || Sbjct 19646459 GACACGATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 19646518 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || || | ||||| | | || |||||| Sbjct 19646519 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACACTGGCTGACTACAAC 19646578 Query 23791 ATACAAAAAGAGTCCAC 23807 ||||| || || ||||| Sbjct 19646579 ATACAGAAGGAATCCAC 19646595 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| | || ||||| ||| || Sbjct 19646627 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCG 19646686 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || ||| | || || || || Sbjct 19646687 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 19646746 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || || | || || | | ||||||||| Sbjct 19646747 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGGACCCTTGCGGATTACAAC 19646806 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || |||||||| | ||||| || Sbjct 19646807 ATCCAGAAGGAGTCCACCCTCCATTTGGT 19646835 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || || || ||||| || || || || ||| || Sbjct 19645715 ATGCAGATTTTTGTGAAGACACTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCG 19645774 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| || || ||||| || || | || ||||| || Sbjct 19645775 GATACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 19645834 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || || | ||||| | | || |||||| Sbjct 19645835 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAC 19645894 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 19645895 ATCCAGAAGGAGTCCAC 19645911 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| ||| | || |||||||| || | | || ||||| || || ||||||||| Sbjct 18102044 GACAAAGAGGGTATTCCCCCAGATCAGCAAAGGCTGATTTTTGCAGGGAAGCAACTGGAA 18102103 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || | |||||| |||| ||||||||||| || || ||||| || | ||||| || Sbjct 18102104 GATGGACGCACATTAGCTGATTACAACATTCAGAAGGAGTCAACGCTCCATTTGGT 18102159 >seq5 Length=20131956 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || ||||| || ||||| || || || || ||| | Sbjct 16284007 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTTGAGGTGGAGTCCTCC 16284066 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| |||| | | ||||| || || | || || || || Sbjct 16284067 GATACCATTGACAATGTTAAGGCAAAGA-TCCAGGACAAGGAGGGCATTCCCCCGGACCA 16284125 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||||||||| || || |||| | || ||| || ||||| Sbjct 16284126 GCAGCGTCTGATCTTTGCCGGCAAACAGCTCGAGGACGGCAGGACCCTAGCTGACTACAA 16284185 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 16284186 CATCCAGAAGGAGTCCAC 16284203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999338345428