Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 6e-14 seq2 84.2 3e-11 >seq6 Length=21794218 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | ||| || | ||| |||| | | ||| |||| ||| || Sbjct 2575440 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCCA 2575381 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || |||||||||||||| ||||| || || | || | |||||| || ||| Sbjct 2575380 TTGGAGGTTCCATTTGTTCCTCGGATATAGCTCCCGGTAGCTCTAATATTGTGAACTGAT 2575321 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || ||||| ||||| || || Sbjct 2575320 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAAATT 2575261 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| | ||| |||||||| Sbjct 2575260 CCCTCGATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 2575220 >seq2 Length=27082872 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 77502 TCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCT 77561 ||||| || |||||||| ||||| ||||| || || || ||| |||| || | || || Sbjct 25697205 TCTGCCAAGCCCTGAACACCAATTCCAATTGGCCTGTGCCTCATATTTGATCTCTTTGCA 25697146 Query 77562 -TCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCT 77608 ||| || ||||||||||||| | || || ||||||||||||||||| Sbjct 25697145 GTCTC-AACAGGATAATAATTAGTATCAATTATTTTATTGAGATTTCT 25697099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694647169750240