Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 3e-12 seq2 86.0 9e-12 >seq6 Length=21794218 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | |||||| | ||| |||| | | ||| |||| ||| || Sbjct 2575440 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCCA 2575381 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || ||||||||||| ||||| || || || | |||||| || ||| Sbjct 2575380 TTGGAGGTTCCATTTGTTCCTCGGATATAGCTCCCGGTAGCTCTAATATTGTGAACTGAT 2575321 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| ||||| || ||||| || Sbjct 2575320 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAAATT 2575261 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | ||| |||||||| Sbjct 2575260 CCCTCGATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 2575220 >seq2 Length=27082872 Score = 86.0 bits (94), Expect = 9e-12 Identities = 116/157 (74%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTG--TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550 ||||||||||||| |||||| | | | ||||||||||||||| |||| |||||| Sbjct 25696403 TCTCTTTCATATTTCTTGTATAGATTC--TGAAATTCATCTCCCCAGCAATCAGCCAAAC 25696346 Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATA 76609 | ||| |||||| ||||| | || || ||| | ||| | | || |||| || ||| Sbjct 25696345 CCGGAGCTTCATTGGGACAAAACAGTGCCCAGTTTTCAT-TACTTTGCACCCTTTCCATG 25696287 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 || ||||| || ||||| |||||| || ||||||| Sbjct 25696286 AACAGATCTGGAATCCAGAGAGCATAGAAAAGATCTC 25696250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712912201005120