Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq8 113 6e-20 seq1 107 2e-18 seq3 89.7 6e-13 >seq8 Length=18224760 Score = 113 bits (124), Expect = 6e-20 Identities = 133/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 184006 GCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATC 184065 ||| | ||| |||| | ||||| || ||||| || || || || |||||||| | | Sbjct 4907516 GCTTTAGGTATTAGTAGCATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TT 4907460 Query 184066 ATTGATGGTCAA-GGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCT 184124 | | | | ||| |||| ||| | || || ||||| || | |||||| |||| ||| Sbjct 4907459 GTAGTTAGCCAAAGGTCATGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCT 4907400 Query 184125 TGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||| | |||||| |||||||| ||||||||||||||||||||||| ||||| ||| || Sbjct 4907399 TGGTACGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 >seq1 Length=33916305 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 183520 TGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGT 183579 || || |||||||||||||||||| || || |||||| ||||||||||||||||| | Sbjct 8033871 TGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 8033812 Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGT 183639 ||||| ||| || | |||||| ||||| || || | ||| || | || ||| | ||| Sbjct 8033811 GTTGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGT 8033752 Query 183640 CAAGGTTCTTTTAGTGATGGTATG 183663 ||||| ||| |||||||||| Sbjct 8033751 CAAGGAAGTTTCTCTGATGGTATG 8033728 >seq3 Length=29620734 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || || ||||||||||| || || ||| | || || ||| || || |||||||| Sbjct 28668167 TACATCCTTGATGCTGCCGAGACCGCCGGAGTGGAGCTGCCCTACTCATGCCGTGCTGGA 28668226 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 || || || ||||||||||| || |||||| ||| | || || || || || || Sbjct 28668227 GCATGCTCTACCTGTGCTGGTAAGATTGAGGCTGGCACCGTCGACCAGTCGGACGGGTCA 28668286 Query 171120 TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACA 171179 ||||||||||||| ||| ||| ||| | | ||||| |||||||| || ||| | Sbjct 28668287 TTCCTTGATGATGCGCAGCAGGAAGAAGGCTATGTGCTGACATGCGTCTCCTACCCT--A 28668344 Query 171180 AGT--GATTGTGTAATC 171194 ||| || ||||| ||| Sbjct 28668345 AGTCGGACTGTGTCATC 28668361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622051030282920