Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq8 120 3e-22 seq1 113 5e-20 >seq8 Length=18224760 Score = 120 bits (132), Expect = 3e-22 Identities = 146/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 164723 GGTATCTGGTTTACT----GCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTT 164778 |||| ||||| ||| ||| | || |||| | |||||| |||||||| ||||| || Sbjct 4907535 GGTACATGGTTCACTATGCGCTTTAGGTATTAGTAGCATGGCTTTCAACCTAAACGGATT 4907476 Query 164779 CAACTTCAACCAGTCCATCATCGATGGTCAG-GGTCGTGTGCTCAACACCTGGGCAGACG 164837 ||| |||||||| | | | | | | || |||| ||| | || || ||||| || Sbjct 4907475 CAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCATGTTATAAATACTTGGGCTGATA 4907419 Query 164838 TTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 164897 | |||||| |||| ||| || | |||||| |||||||| ||||||||||||||||||| Sbjct 4907418 TCATCAACCATGCTAATCTTGGTACGGAAGTAATGCACGAACGTAATGCTCACAACTTCC 4907359 Query 164898 CTCTCGACCTTGCTGCT 164914 |||| ||||| ||| || Sbjct 4907358 CTCTAGACCTAGCTACT 4907342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 165302 GAGTTCCTATCTTGAGGGTGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACG 165360 ||||||| || | || ||| | ||||||| |||| |||||||| || || || | Sbjct 15457281 GAGTTCCAATTTGGAAGGTTGTAG-TTTCTTAACTGCAGCAGTTTCCACCCCTGCCAATA 15457223 Query 165361 CTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCT 165420 | | | || ||| | |||| |||||| | || || ||||| | || | || | Sbjct 15457222 GTTTAGTACACTCTTTGTTGCTACTATGGTGCCCGGA-----AAGGGTATTTTACTCGTT 15457168 Query 165421 GGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAG 165480 |||| ||| | || || ||||||||||||| || ||||| || || |||||||| |||| Sbjct 15457167 GGTGTCAATTAGGTGGTCTCTGGACTTTTGGTGCTCTCCATGGGGCTTTTGCACTAATAG 15457108 Query 165481 GTTTCATGCTTCGCCAGTTTGAACTGGCACG 165511 |||||||| | | || ||||| || || || Sbjct 15457107 GTTTCATGTTACATCAATTTGACCTTGCTCG 15457077 >seq1 Length=33916305 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 ||| |||||||||||||||||||| || |||||| |||||||||||||||||| || Sbjct 8033869 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 8033810 Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 164373 ||||| ||||||| ||| || || || | | | | ||| || | || ||| | ||||| Sbjct 8033809 TGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCA 8033750 Query 164374 AGGTTCTTTCTCTGATG 164390 ||| ||||||||||| Sbjct 8033749 AGGAAGTTTCTCTGATG 8033733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557637036036120