Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_031933.1 Length=114180 Score E Sequences producing significant alignments: (Bits) Value seq260 84.2 2e-11 >seq260 Length=5369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 86819 AGTTAGTACAACAGCACCAGCTTCTCCATCAACAGAGAAAACGCCGGCAACTGCGGCGTC 86878 ||||| ||| ||| || |||| |||||||||| |||| ||| |||| || || || Sbjct 338 AGTTAAGTCAATAGCTCCCGCTTTGCCATCAACAGTAGAAACCCCGACAACAGCAGCATC 397 Query 86879 TCTATTAACTACAACATAGGGGGCCATAGCCCCACTTTTTGGCATTAAATTACGTGACAT 86938 |||| ||||||||||||| || |||| ||| ||| ||||||||||| | || ||| Sbjct 398 TCTACTAACTACAACATAAGGCATCATAATCCCTGATTTAGGCATTAAATTTCTTGCCAT 457 Query 86939 T 86939 | Sbjct 458 T 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 365240111315991