Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq8 134 2e-26 seq1 102 1e-16 >seq8 Length=18224760 Score = 134 bits (148), Expect = 2e-26 Identities = 153/203 (75%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 178393 GGTATCTGGTTCACT----GCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTT 178448 |||| ||||||||| ||| | ||| |||| | |||||| |||||||| ||||| || Sbjct 4907535 GGTACATGGTTCACTATGCGCTTTAGGTATTAGTAGCATGGCTTTCAACCTAAACGGATT 4907476 Query 178449 CAACTTCAACCAGTCCATCATGGATAGTCAG-GGCAAAGTCCTGAACACCTGGGCAGACG 178507 ||| |||||||| | | | | ||| || || | || | || || ||||| || Sbjct 4907475 CAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCATGTTATAAATACTTGGGCTGATA 4907419 Query 178508 TTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCC 178567 | |||||| |||| |||||||| |||||| |||||||| ||||||||||||||||||| Sbjct 4907418 TCATCAACCATGCTAATCTTGGTACGGAAGTAATGCACGAACGTAATGCTCACAACTTCC 4907359 Query 178568 CTCTTGACCTCGCTGCTGCTGAA 178590 |||| ||||| ||| || |||| Sbjct 4907358 CTCTAGACCTAGCTACTCTTGAA 4907336 >seq1 Length=33916305 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984 || |||||||||||||||||||| || ||| || ||||||||||| ||||| ||| Sbjct 8033868 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 8033809 Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044 ||||| ||||||| || || || || || || | ||| | |||| ||| | |||||| Sbjct 8033808 GCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCAA 8033749 Query 178045 GGTTCTTTCTCTGACGCTATG 178065 || ||||||||| | |||| Sbjct 8033748 GGAAGTTTCTCTGATGGTATG 8033728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596288632484560