Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq8 116 4e-21 seq1 104 3e-17 seq3 82.4 9e-11 >seq8 Length=18224760 Score = 116 bits (128), Expect = 4e-21 Identities = 123/160 (77%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 170180 ATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAG-GGTCG 170238 ||||| |||||||| ||||| ||||| |||||||| | | | | | | || |||| Sbjct 4907498 ATGGCTTTCAACCTAAACGGATTCAATTTCAACCAAT---TTGTAGTTAGCCAAAGGTCA 4907442 Query 170239 TGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCA 170298 ||| | || || ||||| || | |||||| |||| |||||| | |||||| ||||| Sbjct 4907441 TGTTATAAATACTTGGGCTGATATCATCAACCATGCTAATCTTGGTACGGAAGTAATGCA 4907382 Query 170299 CGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCT 170338 ||| ||||||||||||||||||||||| ||||| ||| || Sbjct 4907381 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTACT 4907342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 171018 GTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTT 171077 || ||||| || |||| | ||||| || |||||||||| | || |||||||| Sbjct 15457057 GTATTCCTAATTAATCCACCGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGAGT- 15456999 Query 171078 GCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCA 171137 |||||||| || | | | | |||||| | ||||| || ||||| |||| | |||||| Sbjct 15456998 GCAGCAATATTTTGATCCATCCTCTTCTTCCAAGGATTTCACAATTGGAAGTTAAATCCA 15456939 Query 171138 TTTCATATGATGGGTGTT 171155 |||||||||||||| ||| Sbjct 15456938 TTTCATATGATGGGAGTT 15456921 >seq1 Length=33916305 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 169678 TTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGT 169737 ||| |||||||||||||||||| || | |||||||||||||| |||||||| ||| Sbjct 8033869 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 8033810 Query 169738 TGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCA 169797 ||| || ||||||| ||||| || || | || ||||| || | ||||| |||| || Sbjct 8033809 TGCATATTCTGCTCTTGTTGCAGCTGCTACTACTATTTTCTTGATTTACCCTATTGGTCA 8033750 Query 169798 AGGGTCGTTCTCTGACGCTATG 169819 ||| |||||||| | |||| Sbjct 8033749 AGGAAGTTTCTCTGATGGTATG 8033728 >seq3 Length=29620734 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 171021 TTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCA 171080 ||||| || ||||| || ||||| || | | ||||| | || ||| || ||| Sbjct 22064864 TTCCTAATTTATCCACTGGGGCAATCCGGCTTCTTCTTTGTGCCAAGTTTTATGGTAGCA 22064923 Query 171081 GCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTT 171140 || || || |||||| | ||||| | |||| || ||||| |||||| ||| |||||| Sbjct 22064924 GCGATATTTCGCTTCATCCTCTTTTTCCAAGAATTTCACAATTGGACATCGAACCCATTT 22064983 Query 171141 CATATGATGGGTGTTGCAGG 171160 ||||||||||| ||||| || Sbjct 22064984 CATATGATGGGAGTTGCTGG 22065003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592179960422320