Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12822 161 2e-34 seq13224 152 1e-31 seq261 107 4e-18 seq18852 105 1e-17 seq10518 105 1e-17 seq24083 104 5e-17 seq24063 104 5e-17 seq23792 104 5e-17 seq23262 104 5e-17 seq19954 104 5e-17 seq19896 104 5e-17 seq18670 104 5e-17 seq16321 104 5e-17 seq16320 104 5e-17 seq16309 104 5e-17 seq10059 104 5e-17 seq6163 104 5e-17 seq6022 104 5e-17 seq1054 104 5e-17 seq596 104 5e-17 seq10205 100 6e-16 seq21276 98.7 2e-15 seq311 86.0 1e-11 seq999 84.2 5e-11 >seq12822 Length=10151 Score = 161 bits (178), Expect = 2e-34 Identities = 312/455 (69%), Gaps = 8/455 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 2563 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 2504 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 2503 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 2444 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||| || || | |||| | || | || ||| Sbjct 2443 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 2384 Query 230353 CAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | |||||| | | |||| || ||| | ||| | | || || || || | | Sbjct 2383 CGCGGCAAGCT-CGA--CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 2327 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || | ||||||| | || ||||| | || ||||| || | |||||||||| || || Sbjct 2326 GAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGACCT 2268 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||||||||| ||||||||| | | | ||||| || | | |||| Sbjct 2267 CATGAGCCAGTACATCGAATTCGTCGCCGACCGCCTCCTCATGGCACTCGGCTGCAAGAA 2208 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| |||||||| | | ||||||||||| || || || || ||||| Sbjct 2207 GATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGAC 2148 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||| ||||| ||| | ||||| |||| Sbjct 2147 CAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 2113 >seq13224 Length=26385 Score = 152 bits (168), Expect = 1e-31 Identities = 311/455 (68%), Gaps = 8/455 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 16002 TTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTC 16061 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 16062 TGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAG 16121 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||||||||| | |||| | || | || ||| Sbjct 16122 CTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 16181 Query 230353 CAGAACAAGCTACCATTCGAG--ACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | |||||| | | |||| ||| ||| | | ||| | | || || || || | | Sbjct 16182 CGCGGCAAGCT-CGA--CGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATC 16238 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || | ||||||| | || ||||| | || ||||| || | || ||||||| || || Sbjct 16239 GAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGGATGAACGGCGAGCT 16297 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||| ||||| |||||||| | | | || || || | | |||| Sbjct 16298 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAA 16357 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| ||||| || | | ||||||||||| || || || || ||||| Sbjct 16358 GATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGAC 16417 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||| ||||| ||| | ||||| |||| Sbjct 16418 CAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 16452 >seq261 Length=45253 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 26883 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 26942 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 26943 GCCCCACGGTGGGC 26956 >seq18852 Length=34839 Score = 105 bits (116), Expect = 1e-17 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| ||||||||||||||||||||||||||| || || |||| || |||||||||||||| Sbjct 3388 GCTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 3329 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 3328 GAGCCCCACGGTGGGC 3313 >seq10518 Length=17299 Score = 105 bits (116), Expect = 1e-17 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 |||| | || ||||||||||||||||||||||||||| || || |||| || ||||||| Sbjct 9366 TTAATATGCAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 9307 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 9306 TGGGTTCGAGCCCCACGGTGGGC 9284 >seq24083 Length=26207 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 5255 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5314 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5315 CCCACGGTGGGC 5326 >seq24063 Length=91548 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 52479 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 52420 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 52419 CCCACGGTGGGC 52408 >seq23792 Length=10832 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 5243 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5302 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5303 CCCACGGTGGGC 5314 >seq23262 Length=11205 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 5726 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5785 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5786 CCCACGGTGGGC 5797 >seq19954 Length=52355 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3239 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3180 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3179 CCCACGGTGGGC 3168 >seq19896 Length=107509 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 48881 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 48822 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 48821 CCCACGGTGGGC 48810 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 165719 GCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGATG 165778 |||||||||||||||||| || || |||| || |||||||||||||||||||||||| || Sbjct 49105 GCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTG 49046 Query 165779 GGC 165781 ||| Sbjct 49045 GGC 49043 >seq18670 Length=16022 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 15182 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15241 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15242 CCCACGGTGGGC 15253 >seq16321 Length=4188 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3635 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3694 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3695 CCCACGGTGGGC 3706 >seq16320 Length=7775 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 3453 CTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 3512 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 3513 AGCCCCACGGTGGGC 3527 >seq16309 Length=26886 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 5638 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5697 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5698 CCCACGGTGGGC 5709 >seq10059 Length=53196 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 10044 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9985 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9984 CCCACGGTGGGC 9973 >seq6163 Length=65968 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 38847 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 38788 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 38787 CCCACGGTGGGC 38776 >seq6022 Length=17457517 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 15681010 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15681069 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15681070 CCCACGGTGGGC 15681081 >seq1054 Length=14727 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 12516 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12575 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12576 CCCACGGTGGGC 12587 >seq596 Length=8658 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4390 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4449 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4450 CCCACGGTGGGC 4461 >seq10205 Length=97020 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||| ||| || || |||| || |||||||||||||||| Sbjct 35565 TTGCCCGTCTAGCTCAGTCGGTAGAACGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 35506 Query 165768 GCCCCACGATGGG 165780 |||||||| |||| Sbjct 35505 GCCCCACGGTGGG 35493 >seq21276 Length=49253 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || ||||||||||| |||||| Sbjct 14676 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGGTCGAGC 14735 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14736 CCCACGGTGGGC 14747 >seq311 Length=20984 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/73 (86%), Gaps = 3/73 (4%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||| ||||||| ||||||| || || |||| | |||||||||||||||| Sbjct 11693 TGCCCGTCTAGCCCAGTCGGCAGAGCGCAAGGCTCTTAACC---TGGTCGTGGGTTCGAG 11637 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 11636 CCCCACGGTGGGC 11624 >seq999 Length=13376 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 13318 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057477047281370