Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10866 125 8e-24 seq1402 122 1e-22 seq2330 116 4e-21 seq17240 107 2e-18 seq10092 105 8e-18 seq11087 98.7 1e-15 seq7833 96.9 4e-15 seq17239 91.5 2e-13 seq7832 91.5 2e-13 seq9995 82.4 9e-11 seq834 82.4 9e-11 >seq10866 Length=43988 Score = 125 bits (138), Expect = 8e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| ||||| ||| |||||| || || |||||||| || | || || | Sbjct 18391 ACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCC 18450 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || || |||||||| || | || | ||||||||| Sbjct 18451 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTT 18510 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | |||| || ||| | | | ||||| ||| || || || | || | Sbjct 18511 GTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAA 18569 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||||||| || | ||||| ||||||||||||||| Sbjct 18570 TGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 18607 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| |||||||| | || |||| || |||||||| || ||||| Sbjct 18643 CTCCTTGTGGATATTGTAGTCAGCCAGGGAGCGTCCGTCCTCGAGCTGCTTGCCGGCGAA 18702 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 |||| ||||||||||| || | || |||||||||| ||| | || | || | Sbjct 18703 GATGAAGCGCTGCTGGTCCCGGGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACAT 18761 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || || || || || | ||| ||||| || || || || ||||| | Sbjct 18762 TGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTCTTGA 18821 Query 43171 CAAAGATTTGCAT 43183 |||| || ||||| Sbjct 18822 CAAAAATCTGCAT 18834 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTA-CCAGCGA 43050 ||| || ||||| |||||||| || || || || |||| || || ||||| || || | Sbjct 18871 CTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGTCCGTCCTCAAGTTGCTTTGCCCGCAA 18930 Query 43051 ATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGC 43109 | ||||| ||||||||||| | || | | |||||||||| ||| | || | |||| Sbjct 18931 AGATGAGGCGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCC-TGAATCTTGGCCTTGACA 18989 Query 43110 GTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | |||| | || || || || | || ||||| ||||| || || ||||| Sbjct 18990 TTGTCAATCGTGCCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTC 19049 Query 43170 ACAAAGATTTGCATTTTTAC 43189 |||||||| ||||| | ||| Sbjct 19050 ACAAAGATCTGCATCTGTAC 19069 >seq1402 Length=13741 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| || ||||| || ||| |||| || Sbjct 4587 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTC 4528 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||| | ||| | | |||||||||| Sbjct 4527 CAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 4468 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | || |||| || | ||||||||| ||||| || | ||||||||| || Sbjct 4467 CACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTT 4408 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| || ||||| ||||| Sbjct 4407 CCCCGTCAGGGTCTTCACGAAGATCTGCAT 4378 >seq2330 Length=21218 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || ||| |||| || |||||||| || ||||| Sbjct 4245 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 4304 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| ||| | | |||||||||| ||| || || | ||| Sbjct 4305 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 4363 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | |||||| || || ||||| || ||||| | Sbjct 4364 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCA 4423 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 4424 CGAAGATCTGCATCTT 4439 >seq17240 Length=28509 Score = 107 bits (118), Expect = 2e-18 Identities = 143/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| ||||| ||||| || | || | || || ||||||||||| ||||| Sbjct 21451 CTCTTTCTGAATTTTGTAGTCAGCAAGGTTGCGTCCTTCCTCGAGCTGCTTACCGGCGAA 21510 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT--------TGT 43103 ||||| ||||||||||| | || | || |||||||||| ||| ||| || Sbjct 21511 GATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTTACCTTCACTGC 21570 Query 43104 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGC 43163 || | | | | |||||| || ||||| |||| ||||||| ||||| || || Sbjct 21571 TTCACATTGTCGATGGTGTCGGATGACTCCACCTCGAGGGTGATGGACTTGCCGGTCAGA 21630 Query 43164 GTCTTTACAAAGATTTGCAT 43183 ||||| |||||||| ||||| Sbjct 21631 GTCTTCACAAAGATCTGCAT 21650 >seq10092 Length=22630 Score = 105 bits (116), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || |||| |||| || | || | ||| |||||| || || ||||| ||||| Sbjct 17494 TCCACCCCTTAGGCGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 17435 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| | || || |||||||| || || || || || ||||||||||| | || Sbjct 17434 GAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGGTCTGGGGG 17375 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | || |||||||||| ||| || || | ||| | | | |||||| || || | Sbjct 17374 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCTGATGACTCAA 17316 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | ||| ||||| ||||| || || ||||| |||||||| |||||| Sbjct 17315 CCTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATT 17266 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||| || || ||| | || || |||||||| |||||||| Sbjct 17002 TCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAG 16943 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | | |||||||||| ||| || || | | Sbjct 16942 ATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTG 16883 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || || || || || || | || ||||| ||||| || || ||||| ||| Sbjct 16882 TCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACA 16823 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 16822 AAGATCTGCAT 16812 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || |||||| ||||| ||||| || || || || || | || || Sbjct 17704 CACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTC 17645 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||||||||||||||| ||||||| ||||||||| | || | || |||||| ||| Sbjct 17644 CAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTG 17585 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 ||| || || | ||| | | | ||||| |||| || || || | || || | Sbjct 17584 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCTGAGCTC---TCAACCTCCAGGGTAATAG 17529 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | ||||| || || ||||| || || || |||||| Sbjct 17528 TCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 17494 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| |||| || | || | || | ||| |||||| || || ||||| ||||| Sbjct 17266 TCCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 17207 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 17206 AAGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCG-GGG 17148 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| || | |||| | | ||| | | | || || || || | Sbjct 17147 AATCCCCTCCTTGTCC-TGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA 17089 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| || ||||| || | ||||| |||||||||||||| Sbjct 17088 CCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 17040 >seq11087 Length=17449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 11941 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 11882 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | ||||||||| ||| || || | ||| Sbjct 11881 GATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 11823 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | ||||||||| || ||||| || ||||| | Sbjct 11822 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCA 11763 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 11762 CGAAGATCTGCATCTT 11747 >seq7833 Length=8852 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| || || || || || | || || |||||||| ||||| || Sbjct 8816 TCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAG 8757 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | | |||||||||| ||| || || | | Sbjct 8756 ATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTA 8697 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||||| || || || || | || ||||| ||||| || || ||||| || Sbjct 8696 TCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACG 8637 Query 43173 AAGATTTGCAT 43183 || |||||||| Sbjct 8636 AATATTTGCAT 8626 >seq17239 Length=15006 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| ||||| || || || | || || |||||||| || || || Sbjct 3587 CTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAAA 3646 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||| ||| ||| || || | | Sbjct 3647 GATAAG-CGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACATT 3705 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || ||||| || | ||||||| ||||| || || || || || Sbjct 3706 GTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCAC 3765 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 3766 AAAGATCTGCAT 3777 >seq7832 Length=9206 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || || || || || || || || | || || |||||| Sbjct 232 TGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGC 173 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || ||||| ||||| ||||||||||| | || | || |||||| ||| ||| || Sbjct 172 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTG 113 Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 || | ||| | | | ||||| || || || || | |||||||| ||||| || Sbjct 112 GCCTTCA-CGTTGTCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGT 54 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||| ||||| Sbjct 53 GAGGGTCTTCACGAAGATCTGCAT 30 >seq9995 Length=52404 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || | || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 8761 AAAAAATTACGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 8702 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 8701 TCACCACTATACTAC 8687 >seq834 Length=41383 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| | |||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 168 AAACAATTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 227 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 228 TCACCACTATACTAC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571634625515720