Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq13224 114 3e-20 seq13116 98.7 2e-15 seq12822 95.1 3e-14 seq3701 95.1 3e-14 seq23879 84.2 5e-11 >seq13224 Length=26385 Score = 114 bits (126), Expect = 3e-20 Identities = 303/452 (67%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 16448 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 16389 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | |||| ||| | ||| Sbjct 16388 CCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCG 16329 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| || || | || |||| ||||||||| Sbjct 16328 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 16269 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| || | ||| | | || |||| || || || | Sbjct 16268 GGGGAGCG-CGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 16210 Query 157497 GAACTC-TCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | | | || | ||| | ||| | | ||||| ||| | | | || Sbjct 16209 GGACGCGTGACTCGTCG-AGCTTGCCGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 16152 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACC---CTTGAA 157611 || ||| || || ||||| | || |||||| ||| | ||| | | || | ||| Sbjct 16151 GCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA- 16093 Query 157612 CTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTC 157671 || | |||||||| |||||| ||||||||||||| || || ||| | ||||| Sbjct 16092 -GTCCG-CGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTC 16035 Query 157672 CAGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | |||| |||| |||| |||| ||| |||| Sbjct 16034 GACGCAGGCGAAGGCGACGAGCCGCTCGGCGA 16003 >seq13116 Length=53864 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| |||| |||||| || ||||||| || || ||||| ||| || Sbjct 9750 GACTTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAACTT 9691 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | || ||| | || |||||||| ||| |||| | || || || ||| Sbjct 9690 GGCGGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTTTCAGTGGGTATACAC 9631 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||||| ||| | || |||| || || | | ||| | | |||||| | || Sbjct 9630 AAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTG-ATGTCTCAGCGCTGGTTTAC 9572 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| ||||||| || ||||| || || || Sbjct 9571 TCATGCTTCACCGACCCTTTTCAATGCTGGCAC 9539 >seq12822 Length=10151 Score = 95.1 bits (104), Expect = 3e-14 Identities = 295/449 (66%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 2117 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 2176 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | | || || | || | Sbjct 2177 CCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAGCCGAGTGCCATGAGGAGGCG 2236 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || || | |||||||| ||||| | || | || |||| ||||||||| Sbjct 2237 GTCGGCGACGAATTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 2296 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| || | ||| | | || |||| || || || Sbjct 2297 GGGGAGCG-CGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 2355 Query 157497 GAACTCTCTCC-CGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | | || || | ||| | ||| | | ||||| ||| | | | || Sbjct 2356 GGACGCGCGCCTCGTCG-AGCTTGCCGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 2413 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 || ||| || || ||||| | || |||||| ||| | ||| | | ||| | Sbjct 2414 GCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAG 2473 Query 157615 CTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCAG 157674 | ||||||||| |||||| ||||||||||||| || || ||| | ||||| | Sbjct 2474 CCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGAC 2533 Query 157675 ACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 |||| |||| |||| || | ||| |||| Sbjct 2534 GCAGGCGAAGGCGACGAGGCGCTCGGCGA 2562 >seq3701 Length=12561 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| || || || | ||||| ||| || || || |||| ||| ||||| | || Sbjct 7357 CAGAGATTTTGACTATGACTACTTTGGTTTTAAGACCCTTGAGAGATCTTATCTGTTAAA 7416 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | ||| ||| ||| | |||||| || ||||| ||| | ||| |||| || | ||||| Sbjct 7417 AGTTGTTGGGAAGGTTGTGGAAAGACCACAGCATATGCTAATGAGAGTTTCTATTGGGAT 7476 Query 248925 TCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGG 248982 ||||||||||| || || | | ||| || | |||||| | ||| | | |||||| Sbjct 7477 ACACAAGGATGATATTGA-ATC-TGCTATCAAAACGTACCACATTATGTCTCAGCGCTGG 7534 Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | || ||||| | || || || ||||| || || || Sbjct 7535 TTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCAC 7572 >seq23879 Length=10367 Score = 84.2 bits (92), Expect = 5e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 239762 GTACTACGAATTCTTGGGTGTTGATGCG-GGCGCCGGTGACGAAGAGATAAAGAAAGCGT 239820 ||||||||| || | || || | ||| ||||||| | ||| ||||| | | |||| Sbjct 6151 GTACTACGACCTCCTCGGCGT-GCCGCGCGGCGCCGACGGCGACGAGATCAGGCGCGCGT 6209 Query 239821 ACCGGCGTCTCGCCCTGCAGCACCACCCGGACAAGAACGGCGACCCGGAGAAGTTCAAGC 239880 ||||||| |||| || |||||||||||||||| ||||||| |||| ||||||| Sbjct 6210 ACCGGCGCGCCGCCGTGACGCACCACCCGGACAAGGGCGGCGACGAGGAGGCGTTCAAGG 6269 Query 239881 AGTTGACCGATGTGTACGACGTGCTCAAAGATCCCGCTAAGCGGCGGGTGTACGA 239935 || || || | |||| | |||||| || ||||| ||| ||| ||||| Sbjct 6270 AGGTGGCCCGCGCGTACCAGGTGCTCGGCGACCCCGCCCTGCGCGAGGTCTACGA 6324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073414218378432