Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13224 165 7e-36 seq12822 143 2e-29 seq2330 100 3e-16 seq10092 96.9 3e-15 seq10866 84.2 2e-11 seq18466 82.4 7e-11 >seq13224 Length=26385 Score = 165 bits (182), Expect = 7e-36 Identities = 470/711 (66%), Gaps = 11/711 (2%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || ||||| || |||||||| || || |||||| | | | || Sbjct 15729 CACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGG 15788 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || || || | ||||| | ||| ||||| || || | ||||| Sbjct 15789 TTCATGTCCGACGTTCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATC 15848 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || ||||| ||||| ||||| || |||| |||||| | ||| ||| | Sbjct 15849 GAGAACATCCACTCAGAGATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGACGTC 15908 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGAT-CGCCAAGAAGGCAGA 57925 ||||| | || ||| ||| ||||| ||| | ||||| | |||| ||||| || Sbjct 15909 GAGAAGGACCGCCTCTTCCGCGCCATCGACACAGTCCCCGCCGTGCGCCGC-AAGGCCGA 15967 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTT 57985 ||| | || |||||| | ||| | | | ||||||||| |||| |||| || Sbjct 15968 CTGGGCCATGCGATGGATCGACGGCGGCGAGCGC---TTCGCCGAGCGGCTCGTCGCCTT 16024 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGA 58044 |||| |||||| || || ||||| ||||| || |||| || | || ||| | |||| Sbjct 16025 CGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCA-TCTTCTGGCTCAAGA 16083 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 | ||||| || ||||| ||||| || || ||||||| | || || ||||||||||||| Sbjct 16084 AGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTC 16143 Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC-CGACGCGGGAT 58163 |||| || || || ||||| | ||| | | | | || | ||||| | | Sbjct 16144 TCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGTCA- 16202 Query 58164 CGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCC 58223 ||| || ||| || || |||| || || | ||||| | ||||| ||| ||| || Sbjct 16203 CGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCG 16262 Query 58224 CTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTT 58283 || || || || | |||| |||||| || | ||| ||||||| ||||| || Sbjct 16263 CTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTC 16322 Query 58284 GCCGACAGACTTTTGCTCGAACT-GATTGGAGAGCGTCATTACAACACGAAAAATCCGTT 58342 |||||| | || | | | || | || | || |||||| || ||||| Sbjct 16323 GCCGACCGGCTGCTCATGGCGCTCGGGTGCA-AGAAGATGTACAACGTCGCCAACCCGTT 16381 Query 58343 TGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || | ||| | || ||||| || |||||||||| ||||| ||||| || Sbjct 16382 CGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAA 16432 >seq12822 Length=10151 Score = 143 bits (158), Expect = 2e-29 Identities = 465/711 (65%), Gaps = 11/711 (2%) Strand=Plus/Minus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || |||||||| ||||| || || || |||||| | | | || Sbjct 2836 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 2777 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || ||||| || | |||||| | ||| |||||||| || | ||||| Sbjct 2776 TTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATC 2717 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || ||||| ||||| || |||| || ||| | ||| || | Sbjct 2716 GAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCC 2657 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGAT-CGCCAAGAAGGCAGA 57925 ||||| | |||||| ||| ||||| || | || || | |||| ||||| || Sbjct 2656 GAGAAGGACCGGCTGTTCCGCGCCATCGACACCGTCCCGGCCGTGCGCCGC-AAGGCCGA 2598 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTT 57985 ||| | || ||||| | ||| | | | ||||||||| | || |||| || Sbjct 2597 CTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC---TTCGCCGAGCGCCTCGTCGCCTT 2541 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGA 58044 |||| |||||| || || ||||| |||||| ||| |||| || | || ||| | |||| Sbjct 2540 CGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCA-TCTTCTGGCTCAAGA 2482 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 | || || || ||||| ||||| || || ||||||| | || || ||||||||||| | Sbjct 2481 AGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 2422 Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC-CGACGCGGGAT 58163 | || || || || ||||| | ||| | | | | || | ||||| || Sbjct 2421 TGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTCGACG-AGGCG 2363 Query 58164 CGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCC 58223 ||| || || || || |||| || |||| ||||| | ||||| ||| ||| || Sbjct 2362 CGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCG 2303 Query 58224 CTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTT 58283 || || || || | |||| |||||| || | ||| ||||||| || || || Sbjct 2302 CTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAATTCGTC 2243 Query 58284 GCCGACAGACTTTTGCTCGAACT-GATTGGAGAGCGTCATTACAACACGAAAAATCCGTT 58342 |||||| | || | | | ||| | || | || |||||| || || || Sbjct 2242 GCCGACCGCCTCCTCATGGCACTCGGCTGCA-AGAAGATGTACAACGTCGCCAACCCCTT 2184 Query 58343 TGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || | ||| | || ||||| || |||||||||| ||||| ||||| || Sbjct 2183 CGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAA 2133 >seq2330 Length=21218 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| || || |||||||| | || || || | Sbjct 4439 AAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCC 4380 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | || || || || ||||||||| || | ||||||||| Sbjct 4379 TCGGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGAC 4320 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| ||||| ||| |||| ||| || | ||| || Sbjct 4319 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTAC 4260 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || ||||| || Sbjct 4259 AACATCCAGAAGGAGTCGACCCTCCACCTGGTGCT 4225 >seq10092 Length=22630 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| |||| ||||| || |||||| | || ||||| | || Sbjct 17039 CATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTC 17098 Query 31252 CGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | | || |||| | | || ||| | ||||||||| || | || || |||| Sbjct 17099 TGATACTATTGACAACGTTAAGGCAAAGA-TCCAGGACAAGGAGGGGATTCC-CCGGACC 17156 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || |||||||| ||| | || || || ||| | || || | Sbjct 17157 AGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTAGGACCCTTGCTGACTACA 17216 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || || || || ||||| || || || | || ||||| || Sbjct 17217 ACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTCCGCCTAAGGGGAGG 17265 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || || || | || ||||| ||| Sbjct 17723 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 17782 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||||||| | || || |||||| Sbjct 17783 GATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 17842 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| ||||||| || | ||| || ||| Sbjct 17843 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAAC 17902 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || ||||| || | || ||||| ||| Sbjct 17903 ATTCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGT 17950 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || || || | || ||||| | || Sbjct 17267 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATCA 17326 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | || || |||||| Sbjct 17327 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 17386 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| |||| || | ||| | || || ||| Sbjct 17387 CAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAAC 17446 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || ||||| || || || | || ||||| || Sbjct 17447 ATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGCCTAAGGGGTGG 17493 >seq10866 Length=43988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || || ||| | || ||||| | || Sbjct 19063 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGAGTCCTCT 19004 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 | || | || | ||||| | || ||||||||| || | || || |||||| Sbjct 19003 GGCACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGAATTCCACCTGACCAG 18944 Query 31313 CAGCGTCTAATATTCGCTGGCAAA-CAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || || || |||||| || | || ||| || | ||||| || Sbjct 18943 CAGCGCCTCATCTTTGCGGGCAAAGCAACTTGAGGACGGACGCACCCTCGCAGATTACAA 18884 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| ||||| || || ||||| || || ||||| |||||||| || Sbjct 18883 CATTCAGAAAGAGTCCACCCTTCACCTTGTGCTTAGGCTGAGGGGAGG 18836 >seq18466 Length=31617 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || || || || |||||| | |||||||| ||||| ||| |||| Sbjct 14316 GGACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTGGA 14375 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||| || |||||||| || || || |||||||| |||| || Sbjct 14376 AGATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAACTCTTCACTTGGTCCT 14435 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 14436 CAGGCTCAGGGGTGG 14450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445623760324080