Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq12822 170 3e-37 seq13224 161 1e-34 >seq12822 Length=10151 Score = 170 bits (188), Expect = 3e-37 Identities = 397/584 (68%), Gaps = 15/584 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||||||| | | || ||||| | ||||| ||||| ||| || || | Sbjct 2979 TGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 2920 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACT 125114 |||||| || ||||| || || ||| ||| | | | ||||| | | || | | Sbjct 2919 GGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCC 2860 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || || ||| | | |||||||| |||| |||||| || ||| Sbjct 2859 CCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATC 2801 Query 125175 GTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 || ||| || || | | ||| | || || || | | |||| | || | Sbjct 2800 GTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCG-CGCG 2743 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||||||||| ||| || |||||| | ||||| || |||||||| ||| Sbjct 2742 CCTTCTACGGATTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGC 2683 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACG 125351 | || | ||||| ||||| | || || || || ||| || ||| |||||||| Sbjct 2682 TCGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGGCTGTTCCGCGCCATCGACACC 2624 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-C 125410 || ||| | | || ||||| | |||| || || |||||||| | || | || | Sbjct 2623 GTCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC 2564 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 |||| |||| | || || || |||||| ||| ||||| |||||||| ||||| | Sbjct 2563 TTCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTC 2508 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || |||| ||||||| |||||||||||||| || |||||||| || || || | | Sbjct 2507 CTTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCA 2449 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 2448 ACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCC 2405 >seq13224 Length=26385 Score = 161 bits (178), Expect = 1e-34 Identities = 397/589 (67%), Gaps = 25/589 (4%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||||||| | | || ||||| | ||||| ||||| ||| || || | Sbjct 15586 TGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 15645 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTT--GA 125112 |||||| || ||||| || || ||| ||| | | | ||||| | | || | | Sbjct 15646 GGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGC 15705 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || ||||| | || | || ||| | | |||||||| || | ||||||||| | Sbjct 15706 CCGAC---GAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCA 15762 Query 125173 TCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCG 125231 |||| ||| || || | | ||| | || ||| | || |||| ||| Sbjct 15763 TCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGACGTTCAGGTCGCC-GAGGC-TCG 15820 Query 125232 TGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 || || ||||| ||||| ||| || |||||| | ||||| || |||||||| || Sbjct 15821 CGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCAGAGATGTACTCGCTTCT 15880 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATCG 125346 | | || | |||||| ||||| | |||| || || ||||| ||| |||| Sbjct 15881 GCTCGAGACGTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCG 15936 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 |||| || || | | || ||||| | |||| || || |||||||| | || | Sbjct 15937 ACACAGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCG 15996 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| | || || || |||||| ||| ||||| |||||||| ||| Sbjct 15997 AGCGCTTCG----CCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCG 16052 Query 125466 GGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 ||| || |||| ||||||| |||||||||||||||||||||||||| || || || Sbjct 16053 GGTTCATTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTT 16111 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | |||||| | || || || |||||||| || ||||| ||||| ||| Sbjct 16112 CTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCC 16160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740822070319240