Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq10866 134 3e-26 seq10092 114 3e-20 seq7833 107 4e-18 seq12013 87.8 4e-12 seq17240 84.2 5e-11 >seq10866 Length=43988 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || |||||||| || || || | || || ||||||||||| || || || Sbjct 18833 ATGCCTCCCCTCAGCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCT 18892 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTT-CCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 | || || | ||||| || ||||| ||| || ||||| || || | ||| || ||||| Sbjct 18893 GCGAGGGTGCGTCCGTCCTCAAGTTGCTTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGG 18952 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || ||||| || || ||||||||||| || || ||||| || | || | | || Sbjct 18953 TGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGCCAGAGGACTC 19012 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| ||||| ||||| || ||||| |||||||| Sbjct 19013 AACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 19063 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || ||||| || ||||| || | ||||| || || || ||||| |||||| Sbjct 18605 ATTCCACCCCTGAGCCTGAGCACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCA 18664 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || | | ||||| || || || || || || || || | | ||| || || | Sbjct 18665 GCCAGGGAGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCCGG 18724 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | ||||| || || Sbjct 18725 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCG 18784 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| || || || || || ||||| |||||||| Sbjct 18785 ACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 18834 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || ||||| || || || || | || || | || || Sbjct 18395 AGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCCATCC 18454 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | ||| ||||| || || || | || || ||| Sbjct 18455 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTTGTCC 18514 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||||||||||| || || | || || | || ||||| || ||||| || Sbjct 18515 TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTT 18574 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || | ||| || ||||| || |||||| Sbjct 18575 TTGCCGGTCAATGTCTTGACAAAGATTTGCATT 18607 >seq10092 Length=22630 Score = 114 bits (126), Expect = 3e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| ||||| || |||||||| || ||||| | || || | || || || || || Sbjct 17697 TGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGC 17638 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || ||||| || || || || || || || |||||||| ||||| Sbjct 17637 TTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTC 17578 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || || || | ||| || || | || ||||| || ||||||||||| ||||| Sbjct 17577 GCCTTCACGTTGTCGATGGTGTCTG-AGCTCTCAACCTCCAGGGTAATAGTCTTGCCAGT 17519 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 17518 GAGAGTCTTGACGAAAATCTGCATT 17494 >seq7833 Length=8852 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || ||||| || ||||| || | ||||| | || || Sbjct 8609 AGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCC 8550 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | || || || ||||| || || || || ||| Sbjct 8549 TCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCC 8490 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | |||||| | || ||||| | || || ||| Sbjct 8489 TGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTC 8430 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || ||||||||||| Sbjct 8429 TTGCCAGTGAGGGTCTTAACGAATATCTGCAT 8398 >seq12013 Length=80356 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || ||||||||||| || || |||| Sbjct 64482 TTCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAG 64423 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || || | || ||||| ||||| || || || ||||| ||||| || || || || | Sbjct 64422 CTAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGG 64363 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || ||||| ||||||| Sbjct 64362 GAATACCCTCTTTGTCCTGAA 64342 >seq17240 Length=28509 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/220 (68%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || ||||||||||| || ||||||| || | | || || Sbjct 21431 AGGACAAGATGGAGGGTGGACTCTTTCTGAATTTTGTAGTCAGCAAGGTTGCGTCCTTCC 21490 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| || || ||||| || || || || ||| Sbjct 21491 TCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 21550 Query 104468 TGAATCTTTGC--------TTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTG 104519 || |||||| | || ||||| || | ||| ||| | || ||||| || | Sbjct 21551 TGGATCTTTACCTTCACTGCTTCACATTGTCGATGGTGTCGGATGACTCCACCTCGAGGG 21610 Query 104520 TAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || | ||| || || || || || ||||| |||||||| Sbjct 21611 TGATGGACTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 21650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151020756077092