Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq10866 105 6e-18 seq17240 95.1 1e-14 seq17239 89.7 4e-13 seq2330 82.4 6e-11 seq1402 82.4 6e-11 >seq10866 Length=43988 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC 48570 ||| | ||||| ||||| || |||||| || || ||||| ||||||| || | Sbjct 18619 CCTGAGCACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCAGCCAGGGAGCGTCC 18678 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 |||||| |||||||| ||| || | || || |||||||| ||| || | | ||||| Sbjct 18679 GTCCTCGAGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCCGGGGGATGCCCTCCTT 18738 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 |||| ||| ||| ||| | | | || ||||| | |||||| ||| | || || Sbjct 18739 GTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAAT 18798 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || ||||| || || || |||||||||||||| Sbjct 18799 GGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 18834 >seq17240 Length=28509 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||| || ||||| ||||| ||||| | | || | ||||| ||||| Sbjct 21439 ATGGAGGGTGGACTCTTTCTGAATTTTGTAGTCAGCAAGGTTGCGTCCTTCCTCGAGCTG 21498 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || | |||||||| ||| || | | ||||||||| || || Sbjct 21499 CTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 21558 Query 48643 --------CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 |||||| | | | ||||| |||| |||||| ||||| || |||| Sbjct 21559 TACCTTCACTGCTTCACATTGTCGATGGTGTCGGATGACTCCACCTCGAGGGTGATGGAC 21618 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| ||||| |||||||| ||||||||| Sbjct 21619 TTGCCGGTCAGAGTCTTCACAAAGATCTGCATC 21651 >seq17239 Length=15006 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/222 (70%), Gaps = 10/222 (5%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||||||||| ||||| || || || | ||||| |||||||| ||| | Sbjct 3587 CTCCTTCTGAATGTTGTAGTCAGC-AAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAA 3645 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || || |||||||| ||| || | | ||||| ||| || ||| ||| | | Sbjct 3646 AGAT-AAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACAT 3704 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || || |||| |||||| ||| | || |||| || ||||| || ||||||| Sbjct 3705 TGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCA 3764 Query 48714 CAAAAATCTGCATCGTGTCTTGATCGAAGA-AAGAGTGATGT 48754 |||| ||||||||| |||| |||| || |||||||| Sbjct 3765 CAAAGATCTGCATC------TGATGAAAGATAACAGTGATGT 3800 >seq2330 Length=21218 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| |||||||||||||||| ||| || | Sbjct 4245 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 4304 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| || ||| | | ||||||||| || ||| ||| | | Sbjct 4305 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 4364 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || || || || || || || || ||| Sbjct 4365 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 4422 Query 48713 ACAAAAATCTGCATCGTG 48730 || || ||||||||| || Sbjct 4423 ACGAAGATCTGCATCTTG 4440 >seq1402 Length=13741 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| ||| |||||||||||||||| ||| || | Sbjct 4569 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 4510 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| | ||| ||||| Sbjct 4509 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTT 4450 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || ||| | |||| ||| | || ||||| || || || || || ||||| Sbjct 4449 CTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCAC 4390 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 4389 GAAGATCTGCATC 4377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421119774759599