Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq6022 1330 0.0 >seq6022 Length=17457517 Score = 1330 bits (1474), Expect = 0.0 Identities = 759/771 (98%), Gaps = 2/771 (0%) Strand=Plus/Plus Query 22626 GGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC 22685 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1566731 GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC 1566790 Query 22686 ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG 22745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1566791 ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG 1566850 Query 22746 CCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAG 22805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1566851 CCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAG 1566910 Query 22806 CTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 22865 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1566911 CTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 1566970 Query 22866 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGAATAC 22925 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1566971 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATAC 1567030 Query 22926 GTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGA 22985 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1567031 GTGCGCAACAACCGTCTTCCGGAGACTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGA 1567090 Query 22986 TTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCC 23045 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567091 TTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCC 1567150 Query 23046 CGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTG 23105 |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 1567151 CGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGTG 1567210 Query 23106 TTGAGGCCAACGCCCATAATGCGGGCGGTTG-CCCGGCATCCAACGCCATTCATGGCCAT 23164 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 1567211 TTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCCGGCATCCAACGCCATTCATGGCCAT 1567270 Query 23165 ATCAATGATTTTCTGGTGCGTACC-GGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCC 23223 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 1567271 ATCAATGATTTTCTGGTGCTTACCGGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCC 1567330 Query 23224 ATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTAC 23283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567331 ATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTAC 1567390 Query 23284 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAG 23343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567391 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAG 1567450 Query 23344 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT 23394 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567451 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT 1567501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303140594313279