Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq13116 98.7 3e-15 seq6944 95.1 3e-14 seq3701 95.1 3e-14 seq22117 84.2 6e-11 >seq13116 Length=53864 Score = 98.7 bits (108), Expect = 3e-15 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || | ||| | |||||| | || | Sbjct 9422 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGC 9363 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || |||||||||||||| | |||||| |||| || || | || || || Sbjct 9362 AAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGCTACTG-GGAGCTATAT 9304 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| ||| |||||| | ||||| ||||| ||||| || | |||| Sbjct 9303 CCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATAC 9244 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || |||||||| ||| | |||||| Sbjct 9243 TGCCCGTTATGTTGATCAAGGTGGAGGCAAGAG-AAAGGG 9205 >seq6944 Length=13497 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 || |||||| ||| || | ||| |||||||||| |||| |||||||||||||||||| Sbjct 10165 GCGCCATGAGCAATCATACAGTCCCTCTCCATCTCTCCAAACCGGAGACCACCATCGCGT 10106 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGG----TTGCGTGC 371215 || || || |||| || | ||||||| ||| | ||| ||| | | ||| Sbjct 10105 GAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGCACAGGACCACGGCCTCTAGAGTGA 10046 Query 371216 ATGTGACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAAT 371275 || ||||||| | ||||||||||| || | ||| |||||| ||| ||| ||||| Sbjct 10045 AT----CTTGTCATCCACCATGTGCTTAAGTCTCTGGTAATAAGTAGGACCAAGGAAAAT 9990 Query 371276 CAT 371278 ||| Sbjct 9989 CAT 9987 >seq3701 Length=12561 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAATTGTGCTCTTATTTC 363680 ||||| || ||| ||| ||||| || | ||| || || | ||||| ||||| || Sbjct 7687 ATGAAAGATGATAGCATTGAGGGAATTTATGATACTCTCTCAGAAT-GTGCTACCATAAG 7745 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 ||| ||| || ||||||||| | || || |||||| || | || || | ||||||| Sbjct 7746 CAAATGTGCTGGTGGAATTGGTCTCTCAATTCACAATATTAGAGCTACTGGG-AGTTACA 7804 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 |||| || ||| ||| || |||||| | ||||||||||| ||||| || | ||| Sbjct 7805 TTCGAGGAACAAATGGAACATCTAATGGGATTGTTCCCATGCTGCGTGTTTTCAATGATA 7864 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || || ||||| ||| | ||||| Sbjct 7865 CTGCACGTTATGTTGATCAAGGCGGAGGCAAGAGAAAAGG 7904 >seq22117 Length=18574 Score = 84.2 bits (92), Expect = 6e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| | |||| ||| || ||||| |||||||| || ||||||||||| Sbjct 13221 CCAGTTTTATGTTGAGAGCGGGGAGCTATCGTGCCAGATGTATCAACGCTCTGCTGATAT 13280 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || ||||||||||| || || |||||| || | || || || | | | || ||||| Sbjct 13281 GGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATTGCTCA 13340 Query 111821 TTTT 111824 | || Sbjct 13341 TGTT 13344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302926116718418