Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10866 116 3e-21 seq17239 104 2e-17 seq10092 100 2e-16 seq7833 93.3 4e-14 >seq10866 Length=43988 Score = 116 bits (128), Expect = 3e-21 Identities = 167/231 (72%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || | || || ||||| ||| Sbjct 19063 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGAGTCCTCT 19004 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 | ||| || || || || | || || | ||| ||||| || || |||||||||||| Sbjct 19003 GGCACGATTGA--CAATGTCAAGGCCAAGATTCAG-GACAAGGAGGGAATTCCACCTGAC 18947 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAA-CAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || ||||| |||||| ||| | || || | ||||| | | ||||| Sbjct 18946 CAGCAGCGCCTCATCTTTGCGGGCAAAGCAACTTGAGGACGGACGCACCCTCGCAGATTA 18887 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 18886 CAACATTCAGAAAGAGTCCACCCTTCACCTTGTGCTTAGGCTGAGGGGAGG 18836 >seq17239 Length=15006 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||||| || |||||||| | || |||||||| || Sbjct 3777 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCATCC 3718 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| || || || || ||||| || ||||| Sbjct 3717 GACACAATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAG 3658 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||||||||| || | || || | ||||| | | || ||||| Sbjct 3657 CAGCGC-TTATCTTTGCCGGCAAGCAGCTCGAGGAAGGACGCACCCTTGCTGACTACAAC 3599 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || ||| | || || Sbjct 3598 ATTCAGAAGGAGTCGACCCTCCATCTTGTCCT 3567 >seq10092 Length=22630 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || |||| || | || || ||||| || Sbjct 17266 AATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATC 17325 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 17326 AGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 17385 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||||||||||||||| || | || |||| | || | | || ||||| Sbjct 17386 GCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAA 17445 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || || | || || | ||||| || |||| Sbjct 17446 CATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGCCTAAGGGGTGGAA 17495 >seq7833 Length=8852 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | ||||| || |||| || | || || ||||| || Sbjct 8626 ATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCC 8685 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || ||||| ||||| Sbjct 8686 GACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 8745 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || |||| ||||| | | || ||||| Sbjct 8746 CAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAAC 8805 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 | || ||||| |||||| || || Sbjct 8806 A-TCCAAAAGGATCCACCCTGCA 8827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433192806945185