Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10866 118 9e-22 seq10092 113 4e-20 seq17239 107 2e-18 seq2330 102 7e-17 seq7833 100 2e-16 seq5881 100 2e-16 seq17240 96.9 3e-15 >seq10866 Length=43988 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||| ||||| | || || || || || | | Sbjct 18606 ATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTCA 18547 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | ||| ||| ||||| ||||||||| | ||||| || ||||| Sbjct 18546 GACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGAGCATTCCCCCGGATCAG 18487 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| ||||||| | | ||||||||| Sbjct 18486 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAAC 18427 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 18426 ATCCAGAAGGAGTCCACC 18409 Score = 111 bits (122), Expect = 1e-19 Identities = 149/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||| ||||||| || ||||| || || | || || || || | || || || || || Sbjct 19070 TGTACAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGA 19011 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 || | | || | ||| || |||| || ||||| ||||||||||| |||||||| Sbjct 19010 GTCCTCTGGCACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGAATTCCACC 18951 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAA-CAGTTAGAGGATCACCGCACCGTCTCCG 22390 || || || || || || ||||| |||||| || | ||||| |||||| || | | Sbjct 18950 TGACCAGCAGCGCCTCATCTTTGCGGGCAAAGCAACTTGAGGACGGACGCACCCTCGCAG 18891 Query 22391 ATTACAACATTCAAAAAGAATCCACC 22416 ||||||||||||| ||||| |||||| Sbjct 18890 ATTACAACATTCAGAAAGAGTCCACC 18865 >seq10092 Length=22630 Score = 113 bits (124), Expect = 4e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 22204 TATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTT 22263 |||||||| | ||||||| || ||||| || ||| | || || || || | || ||| Sbjct 16797 TATACATTCTTGCAGATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATAACCCTT 16856 Query 22264 GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGT 22323 || || || || | |||||| | ||| || | || || || || ||||||||||| Sbjct 16857 GAGGTTGAGTCCTCGGATACCATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGA 16916 Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || ||||| || || || ||||| || || || ||||| ||| | || ||| ||||| Sbjct 16917 ATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACG 16976 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443 | | || |||||||| || || ||||||||| | ||| | || | || | || ||| Sbjct 16977 CTTGCTGACTACAACATCCAGAAGGAATCCACCCTCCATCTTGTCCTCCGCCTCCGGGGA 17036 Query 22444 GG 22445 || Sbjct 17037 GG 17038 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || | ||||| || || || | | || Sbjct 17723 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 17782 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || || || |||||||| |||||||| || || || Sbjct 17783 GATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 17842 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | || ||| ||| ||| || |||| |||||| Sbjct 17843 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAAC 17902 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 17903 ATTCAGAAGGAGTCTACC 17920 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || | || ||||| || || | | Sbjct 17267 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATCA 17326 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || ||||||||||| ||||| || || || Sbjct 17327 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 17386 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||||||||| ||| | |||||| | | ||| || | || |||||| Sbjct 17387 CAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAAC 17446 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || |||||| | || | ||| |||| Sbjct 17447 ATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCG 17481 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || |||| ||||| || || | | Sbjct 17040 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTCT 17099 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | || ||| || || ||||||||||| ||||| || || || Sbjct 17100 GATACTATTGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGGATTCC-CCGGACCAG 17158 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | |||||| | ||| | | || |||||| Sbjct 17159 CAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTAGGACCCTTGCTGACTACAAC 17218 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 17219 ATCCAGAAGGAGTCCACC 17236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || | || || || || || | | | Sbjct 17495 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTCA 17554 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || || |||||||| || || || || || Sbjct 17555 GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 17614 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || ||| | |||||| ||||||| | |||| |||||| Sbjct 17615 CAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAAC 17674 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || || ||| |||| || || Sbjct 17675 ATTCAGAAGGAGTCTACCCTACACTTGGT 17703 >seq17239 Length=15006 Score = 107 bits (118), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| ||||| | ||||| || | |||| ||||| ||||| | Sbjct 3779 AGATGCAGATCTTTGTGAAAACCCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCAT 3720 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| || | ||| || | || || || || || |||||||| ||||| || || | Sbjct 3719 CCGACACAATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGACC 3660 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || || ||||| ||||||||||| ||| | ||||| |||||| | | || |||| Sbjct 3659 AGCAGCG-CTTATCTTTGCCGGCAAGCAGCTCGAGGAAGGACGCACCCTTGCTGACTACA 3601 Query 22397 ACATTCAAAAAGAATCCACCATACAT 22422 ||||||| || || || ||| | ||| Sbjct 3600 ACATTCAGAAGGAGTCGACCCTCCAT 3575 >seq2330 Length=21218 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || ||| |||| || || ||||| || Sbjct 4439 AAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCC 4380 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| | | || || || || ||||||||||| || || ||||| Sbjct 4379 TCGGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGAC 4320 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || |||||||| ||| | ||||| |||||| || |||| ||| Sbjct 4319 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTAC 4260 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || || ||| Sbjct 4259 AACATCCAGAAGGAGTCGACC 4239 >seq7833 Length=8852 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || ||||| || | || || || || |||| | || || || || Sbjct 8396 AGATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCT 8455 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||||||| | ||| || | || || ||||| ||||||||||| || || || || | Sbjct 8456 CCGATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCAGACC 8515 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||||| ||||| || || ||||| ||| | |||||| || || || | ||||| | Sbjct 8516 AGCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATA 8575 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || || || |||||| Sbjct 8576 ACATCCAGAAGGAGTCCACC 8595 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || | || || || || || || || Sbjct 8626 ATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCC 8685 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || ||||||||||| || ||||| || || Sbjct 8686 GACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 8745 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | |||||| ||||||| | | || |||||| Sbjct 8746 CAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAAC 8805 Query 22399 ATTCAAAAAGAATCCACC 22416 | || ||||| ||||||| Sbjct 8806 A-TCCAAAAGGATCCACC 8822 >seq5881 Length=10397 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || ||||| | || || || | | | Sbjct 10377 ATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACCATCACTTTGGAGGTTGAGAGCTCT 10318 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| ||||| || || || Sbjct 10317 GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 10258 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| |||||| || |||| |||||| Sbjct 10257 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTCGCCGACTACAAC 10198 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 10197 ATCCAGAAGGAGTCCACC 10180 >seq17240 Length=28509 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || ||| | ||||| || | |||| || || ||||| | Sbjct 21652 AGATGCAGATCTTTGTGAAGACTCTGACCGGCAAGTCCATCACCCTCGAGGTGGAGTCAT 21593 Query 22277 CCGATACCGTGGACGATATCAAACA--------AAAAATTCAAGACAAGGAGGGTATTCC 22328 |||| ||| | ||| || | || || ||| || || ||||||||||| ||||| Sbjct 21592 CCGACACCATCGACAATGTGAAGCAGTGAAGGTAAAGATCCAGGACAAGGAGGGCATTCC 21533 Query 22329 ACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388 || || || || || || || || ||||| || ||| | ||||| |||| | | | Sbjct 21532 TCCGGACCAGCAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAGGAAGGACGCAACCTTGC 21473 Query 22389 CGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || ||||| ||||| ||||| |||||| | ||| Sbjct 21472 TGACTACAAAATTCAGAAAGAGTCCACCCTCCAT 21439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419597049979435