Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq10092 104 2e-17 seq10866 102 7e-17 seq17240 95.1 1e-14 seq12013 86.0 5e-12 seq7833 86.0 5e-12 >seq10092 Length=22630 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || | || || |||||| || || || ||| Sbjct 17008 GTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCA 16949 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || || || || ||||| ||||| ||| Sbjct 16948 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTT 16889 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | ||| || || || | ||| | || ||||| || ||||| Sbjct 16888 ACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTC 16829 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 16828 TTCACAAAGATCTGCAT 16812 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || |||| ||||| || || ||||||||||| ||| | || || ||| || Sbjct 17703 ACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCC 17644 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || ||||||||| ||||||| | ||| |||||||| || ||||| || || || Sbjct 17643 AGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 17584 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | |||||| | | || || |||| ||| | || ||| Sbjct 17583 ATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTG 17524 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| || || ||||||||||| Sbjct 17523 CCAGTGAGAGTCTTGACGAAAATCTGCAT 17495 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||||||||| ||| | ||||| |||||| || || || || Sbjct 17919 GTAGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCG 17860 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || ||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 17859 GCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTC 17800 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| |||| | || || |||| || | || ||||| || ||||| Sbjct 17799 ACATTGTCGATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTC 17740 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 17739 TTGACGAAGATCTGCAT 17723 >seq10866 Length=43988 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || || || ||||||||||| ||| | || || ||| || || || || || Sbjct 18410 GTGGACTCCTTCTGGATGTTGTAATCTGCT-AAGGTGCGGCCATCCTCGAGCTGCTTGCC 18468 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || ||||| || ||||| ||||||| || ||||| ||||||| ||| Sbjct 18469 AGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTTGTCCTGAATCTTTGCTTT 18528 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 || | |||| ||||| | || || || |||| ||| | ||||||||||||| || Sbjct 18529 TACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTTTTGCCGGTCAATGT 18588 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 18589 CTTGACAAAGATTTGCAT 18606 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG-TTTACC 114244 || || ||||| |||||||||||||| | || || || |||||||| ||| || Sbjct 18866 GTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGTCCGTCCTCAAGTTGCTTTGCC 18925 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 || ||||||| ||||| ||||| || ||||| || || ||||| |||||| || Sbjct 18926 CGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGAATCTTGGCCTT 18985 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| ||| | | ||| || || || | ||| | || ||||| || || || Sbjct 18986 GACATTGTCAATCGTGCCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGT 19045 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 19046 CTTCACAAAGATCTGCAT 19063 >seq17240 Length=28509 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || | ||| | || || ||||| ||||| ||||| || Sbjct 21415 ACCCCCACGGAGACGGAGGACAAGATGGAGGGTGGACTCTTTCTGAATTTTGTAGTCAGC 21474 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | | || || || || || ||||| ||| ||||||| ||||| ||||||||||| Sbjct 21475 AAGGTTGCGTCCTTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGAGG 21534 Query 114275 AATGCCTTCTTTGTCGGCAATCTTT--------TGTTTTAGCTGTTCAACGGTGTCGGTG 114326 |||||| || ||||| |||||| || || | | || | |||||||| Sbjct 21535 AATGCCCTCCTTGTCCTGGATCTTTACCTTCACTGCTTCACATTGTCGATGGTGTCGGAT 21594 Query 114327 GATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || | ||| | | |||||||||||||| || ||||| |||||||| Sbjct 21595 GACTCCACCTCGAGGGTGATGGACTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 21650 >seq12013 Length=80356 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACG 114223 || |||| || ||||| | ||| || ||||| |||||||||||||| ||| || ||||| Sbjct 64471 AGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGCTAAT-GTACG 64413 Query 114224 AGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTC 114283 |||||| ||||| || || ||| | || || | || ||||| || ||||| || || Sbjct 64412 TCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGGGAATACCCTC 64353 Query 114284 TTTGTC 114289 |||||| Sbjct 64352 TTTGTC 64347 >seq7833 Length=8852 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || ||||| |||||||| || | || || ||| || || || || ||||| || Sbjct 8816 TCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAG 8757 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 ||||||||||| ||||| || || || || || ||||| ||||| || | | Sbjct 8756 ATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTA 8697 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | ||||||| ||| ||||| |||| ||| | || |||||||| || || || || Sbjct 8696 TCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACG 8637 Query 114372 AAAATCTGCATGGCT 114386 || || |||||| || Sbjct 8636 AATATTTGCATGCCT 8622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420003323187588