Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12822 425 1e-113 seq13224 376 5e-99 >seq12822 Length=10151 Score = 425 bits (470), Expect = 1e-113 Identities = 540/729 (74%), Gaps = 18/729 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || |||||||| ||| ||||||||||| Sbjct 2830 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 2771 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||||||| ||||||||| |||||||| ||||| |||||| Sbjct 2770 TCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATCGAGAAC 2711 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || || |||| Sbjct 2710 ATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAG 2651 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGGC 42661 || |||||||| ||||| || || | ||| || | | ||||| |||||||| Sbjct 2650 GACCGGCTGTTCCGCGCCATCGACACCGT-CCCGGCCGTGCGCCGCAAGGCCGACTGGGC 2592 Query 42662 GCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | ||||||||| | ||| ||| |||| |||| | || || ||||| || Sbjct 2591 CATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCT 2536 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 ||||||||| ||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 2535 GCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGG 2476 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| Sbjct 2475 GGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACT 2416 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| ||| ||| Sbjct 2415 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGGCGCG 2361 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | ||| || | || ||||| || ||||||| ||||||| || | |||| Sbjct 2360 CGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCT 2301 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || |||||||||||| |||||||||| || |||||||| | | |||||| Sbjct 2300 CCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAATTCGTCGC 2241 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTC 43076 ||||| ||||| || || || | || | | |||||| |||| ||||||| Sbjct 2240 CGACCGCCTCCTCATGGCACTCGGCTGCAAGAAG-ATGTACAACGTCGCC-AACCCCTTC 2183 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| |||||| || |||||||||||||||| |||||||||||||||| | Sbjct 2182 GACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGC 2123 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 2122 GACTACCAG 2114 >seq13224 Length=26385 Score = 376 bits (416), Expect = 5e-99 Identities = 529/729 (73%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| ||||| || ||||| || |||||||| ||| ||||||||||| Sbjct 15735 CTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 15794 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| | ||||| ||| |||||||||||||||||| ||||| |||||| Sbjct 15795 TCCGACGTTCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 15854 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | |||||||||| || ||||||| Sbjct 15855 ATCCACTCAGAGATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAG 15914 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| || || | ||| | | ||||| |||||||| Sbjct 15915 GACCGCCTCTTCCGCGCCATCGACACAGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCC 15974 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | |||||||| | ||| ||| |||| |||| |||| || ||||| || Sbjct 15975 ATGCGATGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGGCTCGTCGCCTTCGCCTG 16030 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 ||||||||| |||||||||||||| | ||| | ||||||||||||||||| || || Sbjct 16031 CGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 16090 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || ||||||||||| ||||| |||||| | | |||||||| || || Sbjct 16091 ACTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACT 16149 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| || || Sbjct 16150 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGTCACG 16204 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 |||| || ||| || | || |||||||| ||||||| ||||||| || | |||| Sbjct 16205 CGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCT 16264 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || ||||| |||||| ||| |||||| || |||||||| ||| |||||| Sbjct 16265 CCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGC 16324 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTC 43076 ||||| || || || | |||| || | | |||||| |||| ||| ||| Sbjct 16325 CGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAG-ATGTACAACGTCGCC-AACCCGTTC 16382 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| |||||| || |||||||||||||||| |||||||||||||||| | Sbjct 16383 GACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGC 16442 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 16443 GACTACCAG 16451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944037023260240