Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq10866 105 5e-18 seq1402 87.8 1e-12 seq10092 84.2 2e-11 seq18466 82.4 6e-11 seq6022 82.4 6e-11 >seq10866 Length=43988 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || | ||| ||||||||| |||||||||||||| || || Sbjct 18389 AGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGG 18448 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| |||||||||||||||||| || | |||||| Sbjct 18449 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCC 18508 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| | | | ||||||| | || | | || | || || || | || Sbjct 18509 TTGTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGT 18567 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || ||||| ||||| | ||| || ||||||||||||||| Sbjct 18568 AATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 18607 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||||| || ||||| ||| ||| |||||||||||||||||||| Sbjct 18836 CCTCCCCTCAGCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCG 18895 Query 33961 AATTGTCGCTCGTCGTCCAATTGC-TTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | |||| ||||| ||||| || ||||||||||| || || Sbjct 18896 AGGGTGCGTCCGTCCTCAAGTTGCTTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGG 18955 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTC 34076 | | ||| |||||| ||| || ||| | || | || | ||| || || Sbjct 18956 AATTCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATC---GTGCCAGAGGACTC 19012 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||||| || || || || ||||| ||||||||||| ||||| Sbjct 19013 AACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 19063 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||||| || ||||| || |||||| || || ||||| || ||| Sbjct 18608 CCACCCCTGAGCCTGAGCACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCAGCC 18667 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || | ||||||||| ||| || Sbjct 18668 AGGGAGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCCGGGGG 18727 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | || ||| |||||| ||| || ||| || | || | |||||| ||| ||| Sbjct 18728 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTG---TCGATTGTATCAGAAGACTCG 18784 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| || || |||||||| || || || ||||| || ||||| Sbjct 18785 ACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 18834 >seq1402 Length=13741 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || |||| ||| Sbjct 4595 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGC 4536 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || || |||||||| ||| ||| | | ||| Sbjct 4535 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCC 4476 Query 34030 TTGTCC 34035 |||||| Sbjct 4475 TTGTCC 4470 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || ||||| ||||||||| |||||||| || |||| ||| Sbjct 9031 AGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGC 8972 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || || |||||||| | | ||| |||| ||| Sbjct 8971 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTGCGGCGGGACGCCCTCC 8912 Query 34030 TTGTC 34034 |||| Sbjct 8911 CTGTC 8907 >seq10092 Length=22630 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || || || || ||||| ||| ||||||||| |||||||| || || Sbjct 17265 CCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC- 17207 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | |||||||| ||||| ||||| |||||||| ||| | Sbjct 17206 AAGGGTC-CTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGG-G 17149 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| |||||| || ||| ||||| | | | |||||| ||| || Sbjct 17148 GAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA 17089 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || | || || |||||||||||||| Sbjct 17088 CCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 17040 >seq18466 Length=31617 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || |||| ||||| || |||||||||||||||||| || ||| Sbjct 14450 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGCC 14391 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| | || |||| ||||||||||| ||||||| ||||| ||||| Sbjct 14390 AGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATC 14338 >seq6022 Length=17457517 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||||||| ||||||||| |||||||| || |||| || Sbjct 7780151 AGGCGAAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 7780092 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| ||||| ||||| || || ||||||||||| ||| Sbjct 7780091 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCC 7780047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396938521370398