Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq13224 181 1e-40 seq12822 150 2e-31 seq11868 131 2e-25 seq13191 104 3e-17 >seq13224 Length=26385 Score = 181 bits (200), Expect = 1e-40 Identities = 323/458 (71%), Gaps = 20/458 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 16448 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 16389 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| ||||| | | |||| Sbjct 16388 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CACCCGAG-CGCCATGAGC 16334 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| Sbjct 16333 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 16274 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| || |||| || |||||||| || ||||| Sbjct 16273 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGAT 16215 Query 125992 GGCGTGAATG-GTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGG 126047 | || | | ||| | | || | | ||| | | ||| | || ||| || || Sbjct 16214 CTCCTGGACGCGTGACTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GG 16159 Query 126048 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTG 126107 | || || ||||||||||||||| ||||||||||| || || |||||| || || | Sbjct 16158 CGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 16099 Query 126108 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTC 126167 ||||||| || |||||||| | |||||| || || || |||||||||||||||||||| | Sbjct 16098 GCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCC 16039 Query 126168 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 |||| || || ||||| || | ||| ||||| || ||| Sbjct 16038 CCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 16001 >seq12822 Length=10151 Score = 150 bits (166), Expect = 2e-31 Identities = 314/457 (69%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 2117 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 2176 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| || || | | | |||| Sbjct 2177 CCAGTCGAAGGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAGTGCCAT-GAGG 2231 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| | || ||||||| ||| || |||||| |||| ||| Sbjct 2232 AGGCGGTCGGCGACGAATTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 2291 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| || |||| || || ||||| || ||||| Sbjct 2292 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 2350 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGC 126048 || | | | || | | | | ||| | | ||| | || ||| || ||| Sbjct 2351 CTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 2407 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || ||| || |||||||| ||||||||||| || || |||||| || || || Sbjct 2408 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 2467 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 |||||| ||||||||||| | |||||| || || || || || |||||||||||||| || Sbjct 2468 CATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCC 2527 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||| || || ||||| || | ||| ||||| || ||| Sbjct 2528 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 2564 >seq11868 Length=22862 Score = 131 bits (144), Expect = 2e-25 Identities = 283/418 (68%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||| || | || ||||| || || || |||| || | |||| Sbjct 17655 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGC 17714 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| ||||| |||| |||| || || | | | |||| ||||||||||||||| Sbjct 17715 CTGTTTGTCGCGGCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTC 17774 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCGGGCATACCACCCGCACTGCG 10953 ||||| || || ||||| || || | |||||| ||| | | | | || |||| || Sbjct 17775 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 17833 Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGC 11013 ||| | |||||||| ||||||||||| ||||| ||||| || || || | ||| Sbjct 17834 CTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 17893 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 || || | || | ||| || |||||||||||| || |||| || || || | Sbjct 17894 CTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTC 17953 Query 11074 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 || |||| || || ||| || || || || || |||| ||| || || || || Sbjct 17954 GGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 18013 Query 11134 GGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 11190 |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 18014 TGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 18070 >seq13191 Length=72903 Score = 104 bits (114), Expect = 3e-17 Identities = 229/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 8589 CCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAG 8648 |||||| | || || ||| ||| | || | | ||||| || || || ||| | Sbjct 47604 CCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTC 47663 Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708 || ||||| || |||| || ||||| || ||| ||| | |||||||||||||| || Sbjct 47664 AACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAATCC 47723 Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATC--- 8765 || || || ||| | | ||||| || ||||||||| | || | |||| Sbjct 47724 CCACGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAG 47783 Query 8766 GTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 8825 |||| | ||| || || | | || |||||| ||||| |||||||||||| Sbjct 47784 GTCGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGA 47840 Query 8826 CACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAA 8885 |||| |||||| || || || ||||||| | | || || || || || | | ||| Sbjct 47841 TTCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGAC 47900 Query 8886 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 8927 || |||||||| || | |||| | ||| ||||| ||||||| Sbjct 47901 TACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 47942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597162454314920