Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq10866 127 2e-24 seq1402 118 1e-21 seq2330 113 5e-20 seq17240 107 2e-18 seq10092 104 3e-17 seq7833 102 9e-17 seq11087 98.7 1e-15 seq17239 91.5 2e-13 seq7832 91.5 2e-13 >seq10866 Length=43988 Score = 127 bits (140), Expect = 2e-24 Identities = 173/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||||| | || || | | ||| | ||||| ||||| ||| |||||| || || || Sbjct 18370 AATTTAAAGGCCACCGCGGAGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTT 18429 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 |||||| || | || || | || || |||||||| ||||| || || || |||||||| Sbjct 18430 GTAATCTGCTAAGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTG 18489 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGC 42150 || | || | ||||||||||||| ||| | |||| || ||| | | | ||||| Sbjct 18490 ATCCGGGGGAATGCTCTCCTTGTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTG 18548 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| || || || | || ||||||||||| || | ||||| ||||||||||||||| Sbjct 18549 ACGACTCAACCTCCAGGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 18607 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTA-CCAGCGA 42075 ||| || ||||| |||||||| || || || || |||| || || ||||| || || | Sbjct 18871 CTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGTCCGTCCTCAAGTTGCTTTGCCCGCAA 18930 Query 42076 ATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGC 42134 | ||||| ||||||||||| | ||| | | |||||||||| ||| | || | |||| Sbjct 18931 AGATGAGGCGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCC-TGAATCTTGGCCTTGACA 18989 Query 42135 GTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | |||| | || || || || | || ||||| ||||| || || ||||| Sbjct 18990 TTGTCAATCGTGCCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTC 19049 Query 42195 ACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 19050 ACAAAGATCTGCAT 19063 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| |||||||| | || |||| || |||||||| || ||||| Sbjct 18643 CTCCTTGTGGATATTGTAGTCAGCCAGGGAGCGTCCGTCCTCGAGCTGCTTGCCGGCGAA 18702 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 |||| ||||||||||| || | || |||||||||| ||| | || | || | Sbjct 18703 GATGAAGCGCTGCTGGTCCCGGGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACAT 18761 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || || || || || | ||| ||||| || || || || ||||| | Sbjct 18762 TGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTCTTGA 18821 Query 42196 CAAAGATTTGCAT 42208 |||| || ||||| Sbjct 18822 CAAAAATCTGCAT 18834 >seq1402 Length=13741 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| || ||||| || ||| |||| || Sbjct 4587 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTC 4528 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| ||||||||||| | || | | |||||||||| Sbjct 4527 CAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 4468 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | || |||| || | ||||||||| ||||| || | ||||||||| || Sbjct 4467 CACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTT 4408 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || ||||| || ||||| ||||| Sbjct 4407 CCCCGTCAGGGTCTTCACGAAGATCTGCAT 4378 >seq2330 Length=21218 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || ||| |||| || |||||||| || ||||| Sbjct 4245 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 4304 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | | |||||||||| ||| || || | ||| Sbjct 4305 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 4363 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | |||||| || || ||||| || ||||| | Sbjct 4364 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCA 4423 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 4424 CGAAGATCTGCATCTT 4439 >seq17240 Length=28509 Score = 107 bits (118), Expect = 2e-18 Identities = 143/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| ||||| ||||| || | || | || || ||||||||||| ||||| Sbjct 21451 CTCTTTCTGAATTTTGTAGTCAGCAAGGTTGCGTCCTTCCTCGAGCTGCTTACCGGCGAA 21510 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT--------TGT 42128 ||||| ||||||||||| | || | || |||||||||| ||| ||| || Sbjct 21511 GATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTTACCTTCACTGC 21570 Query 42129 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGC 42188 || | | | | |||||| || ||||| |||| ||||||| ||||| || || Sbjct 21571 TTCACATTGTCGATGGTGTCGGATGACTCCACCTCGAGGGTGATGGACTTGCCGGTCAGA 21630 Query 42189 GTCTTTACAAAGATTTGCAT 42208 ||||| |||||||| ||||| Sbjct 21631 GTCTTCACAAAGATCTGCAT 21650 >seq10092 Length=22630 Score = 104 bits (114), Expect = 3e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| || || || Sbjct 17458 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAA 17399 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| || || | ||| Sbjct 17398 AATAAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 17340 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || || | ||| ||||| ||||| || || ||||| | Sbjct 17339 TGTCGATCGTGTCTGATGACTCAACCTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCA 17280 Query 42196 CAAAGATTTGCATT 42209 ||||||| |||||| Sbjct 17279 CAAAGATCTGCATT 17266 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| ||||| || || ||| | || || |||||||| |||||||| Sbjct 17002 TCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAG 16943 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | ||| | | |||||||||| ||| || || | | Sbjct 16942 ATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTG 16883 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || || || || || || | || ||||| ||||| || || ||||| ||| Sbjct 16882 TCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACA 16823 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 16822 AAGATCTGCAT 16812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | || | |||||| || | || |||||| ||||| ||||| || || Sbjct 17722 ACCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGC 17663 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||||||||||||||| ||||||| ||||||||| | || Sbjct 17662 AAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGG 17603 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | || |||||| ||| ||| || || | ||| | | | ||||| |||| | Sbjct 17602 GATGCCCTCCTTATCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCTGAGCTC---T 17547 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || | || || || ||||| || || ||||| || || || |||||| Sbjct 17546 CAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 17494 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| ||||| || Sbjct 17230 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAA 17171 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||||||| || | |||| | | ||| Sbjct 17170 GATCAGACGCTGCTGGTCCG-GGGAATCCCCTCCTTGTCC-TGGATCTTTGCCTTAACGT 17113 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || || || || || | ||||| || ||||| || | ||||| | Sbjct 17112 TGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGA 17053 Query 42196 CAAAGATTTGCAT 42208 ||||||||||||| Sbjct 17052 CAAAGATTTGCAT 17040 >seq7833 Length=8852 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| || || || || || | || || |||||||| ||||| || Sbjct 8816 TCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAG 8757 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | ||| | | |||||||||| ||| || || | | Sbjct 8756 ATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTA 8697 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||||| || || || || | || ||||| ||||| || || ||||| || Sbjct 8696 TCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACG 8637 Query 42198 AAGATTTGCAT 42208 || |||||||| Sbjct 8636 AATATTTGCAT 8626 >seq11087 Length=17449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 11941 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 11882 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | ||||||||| ||| || || | ||| Sbjct 11881 GATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 11823 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | ||||||||| || ||||| || ||||| | Sbjct 11822 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCA 11763 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 11762 CGAAGATCTGCATCTT 11747 >seq17239 Length=15006 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| ||||| || || || | || || |||||||| || || || Sbjct 3587 CTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAAA 3646 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||| ||| ||| || || | | Sbjct 3647 GATAAG-CGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACATT 3705 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || ||||| || | ||||||| ||||| || || || || || Sbjct 3706 GTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCAC 3765 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 3766 AAAGATCTGCAT 3777 >seq7832 Length=9206 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || || || || || || || || || | || || |||||| Sbjct 232 TGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGC 173 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || ||||| ||||| ||||||||||| | || | || |||||| ||| ||| || Sbjct 172 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTG 113 Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 || | ||| | | | ||||| || || || || | |||||||| ||||| || Sbjct 112 GCCTTCA-CGTTGTCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGT 54 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||| ||||| Sbjct 53 GAGGGTCTTCACGAAGATCTGCAT 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543038978694160