Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13224 140 3e-28 seq12822 140 3e-28 seq11087 98.7 1e-15 seq2330 98.7 1e-15 seq17240 96.9 3e-15 seq17239 96.9 3e-15 seq10092 87.8 2e-12 >seq13224 Length=26385 Score = 140 bits (154), Expect = 3e-28 Identities = 349/515 (68%), Gaps = 20/515 (4%) Strand=Plus/Plus Query 52328 GCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGAC-ACCGCCA 52386 |||||||| ||||| ||| | ||||| ||| |||||||| ||| | | ||| Sbjct 15948 GCCGTGCGC-CGCAA---GGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAGCGCTT 16003 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 ||| |||||| | || ||||||||| |||||||| | || || || || | Sbjct 16004 CGC----CGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCAT 16059 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | ||||||||| | | || | | || | ||||| ||||| || ||| ||||| Sbjct 16060 TCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACG 16119 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || | || || |||||||| || || ||| ||||| || |||||| |||| ||| | Sbjct 16120 AGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTAC--GAC-C 16176 Query 52567 GCGTGACCGAAAAATTGGATTCG-GACACGA-TCCTGAGCATGTTCAAGGAGGCGGTGGC 52624 | | || || | || || | |||| ||| | || || || || |||| Sbjct 16177 TCCTCCGCGGCAAGCTCGA--CGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGA 16234 Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCA 52684 ||||| | |||||| | | |||||| || |||| ||| | || ||||||| | Sbjct 16235 CATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGA 16294 Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCC 52744 | |||| || ||||||||||||| || || || || ||| | || ||||||| || Sbjct 16295 GCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGT-GCA 16353 Query 52745 A-AAGTACTTCAACGCTCGC-AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 | ||| | ||||| |||| || ||||| || | ||| | ||| || || ||||| Sbjct 16354 AGAAGATGTACAACG-TCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGC 16412 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| ||||||||||| |||||||| || Sbjct 16413 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 16447 >seq12822 Length=10151 Score = 140 bits (154), Expect = 3e-28 Identities = 495/754 (66%), Gaps = 22/754 (3%) Strand=Plus/Minus Query 52092 GACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTG 52151 ||||||||| | || ||| |||||| | || |||||||||||| |||| |||||||| Sbjct 2857 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 2798 Query 52152 AACATTAACCTCA--TCGAG-TACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAATAC 52208 | |||||| || || | |||| || |||| | || |||||||| | Sbjct 2797 CTCGAGAACCTCGCCTCCAGGTTCATGTC-CG--ACGTGCAGGTCGCCGAGGCGCGCGCC 2741 Query 52209 TTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATT 52268 || || || || | ||||||| | | ||| | ||||||||| ||||| | Sbjct 2740 TTCTACGGATTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGCTC 2681 Query 52269 GAGCAGCTG-ATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGT 52327 ||| | || || || | |||| ||| |||| | || |||| ||| Sbjct 2680 GAG-ACCTACATCCGCGACGGCGCCGAGAAGGACCGGCTGTTCCGCGCCATCGACACCGT 2622 Query 52328 GCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGAC-ACCGCCA 52386 ||| ||| ||| ||||| | ||||| ||| |||||||| ||| | | ||| Sbjct 2621 CCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTT 2562 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 ||| ||||||| | || ||||||||| |||||||| | || || || ||| || Sbjct 2561 CGC----CGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCT 2506 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | ||||||||| | | || | | || | ||||| ||||| || ||| ||||| Sbjct 2505 TCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACG 2446 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || | || || |||||||| || |||||| ||||| || |||||| |||| ||| | Sbjct 2445 AGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC--GAC-C 2389 Query 52567 GCGTGACCGAAAAATTGGATTCGGA-CACGATCCTGAGCATGTTCAAGGAGGCGGTGGCT 52625 | | || || | || || | || | ||| || || || || || | Sbjct 2388 TCCTCCGCGGCAAGCTCGACGAGGCGCGCGTCCGCGAG-ATCGTCGCCGACGCCGTCGAC 2330 Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 ||||| | |||||| | | |||||| || |||| ||| | |||||||||| | Sbjct 2329 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGAC 2270 Query 52686 TCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA 52745 |||| || |||||||||| || || || || || || | || ||||| | || | Sbjct 2269 CTCATGAGCCAGTACATCGAATTCGTCGCCGACCGCCTCCTCATGGCACTCGG-CTGCAA 2211 Query 52746 -AAGTACTTCAACGCTCGC-AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 ||| | ||||| |||| || || || || | ||| | ||| || || |||||| Sbjct 2210 GAAGATGTACAACG-TCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCA 2152 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||| ||||||||||| |||||||| || Sbjct 2151 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 2118 >seq11087 Length=17449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || |||| Sbjct 11943 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 11884 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 11883 AAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACG 11824 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | || || || ||||| || || Sbjct 11823 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTC 11764 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 11763 ACGAAGATCTGCAT 11750 >seq2330 Length=21218 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || ||| |||||| || || || |||| Sbjct 4243 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCG 4302 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 4303 AAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACG 4362 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | ||| || || ||||| || || Sbjct 4363 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 4422 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 4423 ACGAAGATCTGCAT 4436 >seq17240 Length=28509 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | ||||| || ||||| |||||||| Sbjct 21416 CCCCCACGGAGACGGAGGACAAGATGGAGGGTGGACTCTTTCTGAATTTTGTAGTCAGCA 21475 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | | || |||||||| || ||||||| |||| || ||||| ||||||||||| Sbjct 21476 AGGTTGCGTCCTTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGA 21535 Query 138508 ATACCTTCTTTGTCGGTGATTTTT--------TGTTTTA-ATTGTTCCACGGTGTCGGTC 138558 || || || ||||| ||| ||| || || | |||| || | |||||||| Sbjct 21536 ATGCCCTCCTTGTCCTGGATCTTTACCTTCACTGCTTCACATTG-TCGATGGTGTCGGAT 21594 Query 138559 GACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||||| || | | || || |||||||| || ||||| |||||||| Sbjct 21595 GACTCCACCTCGAGGGTGATGGACTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 21650 >seq17239 Length=15006 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || | ||| | | | |||||||| |||||||||||||| Sbjct 3551 GCCACCACGGAGACGGAGGACAAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCAGC 3610 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||||| || || |||| | |||| || ||||| |||||||| || Sbjct 3611 AAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAAAGATAAG-CGCTGCTGGTCCGGGGG 3669 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || || || ||| || || | ||||| | | ||||||| ||||||| Sbjct 3670 AATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGT-CGATTGTGTCGGATGACTCCA 3728 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | | || || ||||| ||||| ||||| |||||||| Sbjct 3729 CCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 3777 >seq10092 Length=22630 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | || ||| || ||||| || || || | Sbjct 17005 GATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCG 16946 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| |||||||| || || || || ||||| ||| || |||| | Sbjct 16945 AAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACA 16886 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||| | || | || || ||||| ||||| || Sbjct 16885 TTG-TCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTT 16827 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 16826 CACAAAGATCTGCAT 16812 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||||| || || || || || |||| Sbjct 17916 GACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCG 17857 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || |||||||| ||||| ||| || || | | Sbjct 17856 AAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACA 17797 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| |||| ||| ||||| | || | || || ||||| ||||| || Sbjct 17796 TTG-TCGATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTT 17738 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 17737 GACGAAGATCTGCAT 17723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496103602235280