Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq13224 172 7e-38 seq12822 150 2e-31 seq11868 127 3e-24 seq13191 100 3e-16 >seq13224 Length=26385 Score = 172 bits (190), Expect = 7e-38 Identities = 321/458 (70%), Gaps = 20/458 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 16448 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 16389 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| ||||| | | |||| Sbjct 16388 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CACCCGAG-CGCCATGAGC 16334 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| Sbjct 16333 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 16274 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| |||||||| || || ||||| Sbjct 16273 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGAT 16215 Query 127465 GGCGTGAATA-GTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAG 127520 | || | ||| | | || | | ||| | | ||| | || ||| || | Sbjct 16214 CTCCTGGACGCGTGACTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-G 16159 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||||||||||||||| ||||||||||| || || |||||| || || | Sbjct 16158 CGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 16099 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 ||||||| || |||||||| | |||||| || || || ||||| || ||||||||||||| Sbjct 16098 GCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCC 16039 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||| || || ||||| || | || |||||||| ||| Sbjct 16038 CCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 16001 >seq12822 Length=10151 Score = 150 bits (166), Expect = 2e-31 Identities = 314/457 (69%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 2117 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 2176 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| || || | | | |||| Sbjct 2177 CCAGTCGAAGGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAGTGCCAT-GAGG 2231 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| | || ||||||| ||| || |||||| |||| ||| Sbjct 2232 AGGCGGTCGGCGACGAATTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 2291 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| ||||| || || || ||||| Sbjct 2292 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 2350 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGC 127521 || | | || | | | | ||| | | ||| | || ||| || || Sbjct 2351 CTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-GC 2407 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| || |||||||| ||||||||||| || || |||||| || || || Sbjct 2408 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 2467 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 |||||| ||||||||||| | |||||| || || || || ||||| |||||||||||||| Sbjct 2468 CATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCC 2527 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||| || || ||||| || | || |||||||| ||| Sbjct 2528 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 2564 >seq11868 Length=22862 Score = 127 bits (140), Expect = 3e-24 Identities = 282/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || | || ||||| || || || |||| || | |||| Sbjct 17655 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGC 17714 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| ||||| |||| |||| || || | | | | || ||||||||||||||| Sbjct 17715 CTGTTTGTCGCGGCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTC 17774 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCA-TTCGCGGGCATACCACCCGCACTGCG 12868 ||||| || || ||||| || || | |||||| ||| | | | | || |||| || Sbjct 17775 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 17833 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 ||| | |||||||| |||||||| |||||||| ||||| || || || | ||| Sbjct 17834 CTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 17893 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 || || | || | || || |||||||||||| || |||| ||| || || | Sbjct 17894 CTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTC 17953 Query 12989 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 || |||| || || ||| || || || || || |||| ||| || || || || Sbjct 17954 GGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 18013 Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 13105 |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 18014 TGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 18070 >seq13191 Length=72903 Score = 100 bits (110), Expect = 3e-16 Identities = 229/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 10504 CCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAG 10563 |||||| | || || ||| ||| | || | | ||||| || || || ||| | Sbjct 47604 CCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTC 47663 Query 10564 AATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCA 10623 || || ||||| |||| || ||||| | ||| ||| | |||||||||||||| || Sbjct 47664 AACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAATCC 47723 Query 10624 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTG 10683 || || || ||| | | ||||| || ||||||||| | || | |||| | Sbjct 47724 CCACGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAG 47783 Query 10684 G-CGGGTG--AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 10740 | |||| ||| || || | | || |||||| ||||| |||||||||||| Sbjct 47784 GTCGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGA 47840 Query 10741 CACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAA 10800 |||| |||||| || || || ||||||| | | || || || || || | | ||| Sbjct 47841 TTCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGAC 47900 Query 10801 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 || |||||||| || | |||| | ||| ||||| ||||||| Sbjct 47901 TACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 47942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613310885364840