Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq12822 215 8e-51 seq13224 205 1e-47 >seq12822 Length=10151 Score = 215 bits (238), Expect = 8e-51 Identities = 496/739 (67%), Gaps = 20/739 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 2132 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTT 2191 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| || | | ||| || || ||||| Sbjct 2192 GGCGACGTTGTACATCTTCTTGCAGCCGAGTGCCATGAGGAGGCGGTCGGCGACGAATTC 2251 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||||| || | Sbjct 2252 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 2311 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | |||||| |||| || ||||| || |||| || |||| ||| ||| || | | Sbjct 2312 GACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGCGCCTCGT 2370 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | |||| | | |||||||| || |||||||||||||| |||| Sbjct 2371 CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCT 2427 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| |||| Sbjct 2428 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTTCTTGA 2487 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||||||||| ||| || || || Sbjct 2488 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCG 2546 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | | |||| | ||||||| || || Sbjct 2547 ACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCAGTCGGC 2602 Query 160126 CTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| ||||||| | | |||| |||| |||| | ||||| ||| Sbjct 2603 C----TTGCGGCGCACGGCCGGGACGGTGTCGATGGCGCGGAACAGCCGGTCCTTCTCGG 2658 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||| || | | |||| ||||||||| || | ||| | || |||| Sbjct 2659 CGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCGGAGTGGATGTTCTCGA 2718 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| || |||||| |||||| |||||| || |||||| Sbjct 2719 TGGCGATCTGGAATCCGTAGAAGGCGCGCGCCTCGGCGACCTGCACGTCGGACATGAACC 2778 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | | || || | || | ||||||| ||| || ||||| || | |||||| | Sbjct 2779 TGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGG 2838 Query 160362 AGATGAAATGTCTCTCGTC 160380 ||||||| || | |||||| Sbjct 2839 AGATGAAGTGGCGCTCGTC 2857 >seq13224 Length=26385 Score = 205 bits (226), Expect = 1e-47 Identities = 424/624 (68%), Gaps = 24/624 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 16433 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 16374 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| |||| || ||| || || || || Sbjct 16373 GGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCGGTCGGCGACGAACTC 16314 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| |||| | ||| ||||| | ||| ||||||||||| || | Sbjct 16313 GATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGACGGGGAGCGCGTCGCA 16254 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| |||| || || || || |||| || |||| | ||| ||| |||| Sbjct 16253 GACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCTGGACGCGTGACTCGT- 16195 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 | ||||||| | | |||| | | |||||||| || ||||||||||| || || Sbjct 16194 --CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGACC 16140 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| || ||||||| ||||||||| | | ||||||||||||||| || ||| || Sbjct 16139 CTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCGCGCTTCTT 16080 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064 |||||| || ||||| ||| || | | | | || ||||||||||| ||| || || | Sbjct 16079 GAGCCAGAAGATGGC-GCAGAATGAACCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGG 16021 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 | ||||||| ||| | || ||| | | | | | | |||| | ||||||| || Sbjct 16020 CGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCATCGCATGGCCCAGTCG 15965 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGC----TCGACGGCGTTAAACAATCTGTCCTGCTC 160179 ||| ||||| ||||||| | | |||| |||| || | | ||||| ||| Sbjct 15964 GCC----TTGCGGCGCACGGCGGGGACTGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTC 15909 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | || ||| || | | ||| ||||||||| |||| ||| | || || Sbjct 15908 GACGTCGTCGCGGATGTACGTCTCGAGCAGAAGCGAGTACATCTCTGAGTGGATGTTCTC 15849 Query 160240 GATGGCCATCTGAAAGTTGTAGAA 160263 |||||| ||||| ||| |||||| Sbjct 15848 GATGGCGATCTGGAAGCCGTAGAA 15825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794900760275440