Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq6410 125 3e-23 seq6022 96.9 1e-14 seq7833 93.3 2e-13 seq10641 87.8 7e-12 >seq6410 Length=44208 Score = 125 bits (138), Expect = 3e-23 Identities = 247/365 (68%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 |||||||||||||| |||||||||| || ||| || | || ||| || | || Sbjct 37529 GAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCTGAAGCTTACCTAGGG 37588 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 || | || | |||| || | |||||||| || || ||||||||| | || |||| Sbjct 37589 TCAACTGTGAAGAATGCTGTTGTCACTGTTCCTGCATACTTCAATGATTCCCAGAGGCAG 37648 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 ||||||||||||||||| |||||| ||| | |||||| | || || || ||||| || Sbjct 37649 GCAACTAAAGATGCAGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCA 37708 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC------AGAAGaaaaa 451480 ||||| ||||| | || ||||| || | || || | || | || || Sbjct 37709 ACAGCTGCTGCAATTGCTTATGGTCTTGACAA---GAAGGCGACTAGTGTTGGTGAGAAG 37765 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || | | | ||||| ||||||| || ||| |||| || | ||| | ||||| Sbjct 37766 AACGTGCTCATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCCCTCCTTACCATTGAG 37825 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 || || | ||||| || || ||||| |||||| ||||| || || || || || || Sbjct 37826 GAGGGTATTTTTGAGGTGAAAGCAACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTT 37885 Query 451601 GATAA 451605 || || Sbjct 37886 GACAA 37890 >seq6022 Length=17457517 Score = 96.9 bits (106), Expect = 1e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | || || ||||| || ||||| ||| || |||| | ||| | | || Sbjct 638284 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 638225 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| ||||||||||||||||| || || || || || || ||||| || Sbjct 638224 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGT 638165 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | || ||||| | |||| | |||| || |||||||| || || |||||||| | Sbjct 638164 CGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTGTCT 638105 Query 451445 TATGGA 451450 |||||| Sbjct 638104 TATGGA 638099 >seq7833 Length=8852 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || ||||| || || || || | || ||||| || || Sbjct 8398 ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCC 8457 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||| || ||||| || || ||||| || || Sbjct 8458 GATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAG 8517 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || ||| | || || || ||||| ||||| | ||| | ||||||||||| Sbjct 8518 CAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAAC 8577 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 8578 ATCCAGAAGGA 8588 >seq10641 Length=15296 Score = 87.8 bits (96), Expect = 7e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || || || || ||||||||||| ||||| || ||| || |||||||| Sbjct 7382 GCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCGACAAAAGATGCT 7441 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| || | ||||| || || || || || ||||| ||||| || | Sbjct 7442 GGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTGCAGCATCTTTG 7501 Query 451442 GCATATGG 451449 |||||||| Sbjct 7502 GCATATGG 7509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975070389678692