Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6410 237 1e-56 seq21277 114 1e-19 seq25059 105 5e-17 seq3895 98.7 8e-15 seq24091 86.0 5e-11 seq23805 86.0 5e-11 >seq6410 Length=44208 Score = 237 bits (262), Expect = 1e-56 Identities = 704/1076 (65%), Gaps = 20/1076 (2%) Strand=Plus/Minus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 |||| || || |||||| |||||| || ||||| ||||| || | ||||| ||| Sbjct 38670 GTTGTCTTGTCTTCGGCAGACACATTCAGGATACCGTTGGCGTCAATGTCAAAGCAGACA 38611 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 || |||||||| || || | ||||| ||||| || || | |||| | || || Sbjct 38610 GTGATCTGAGGGACTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGG 38551 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 ||| || || | || | | | |||||||| | | || || || ||| Sbjct 38550 AGATTGTTGTCCCTGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGC 38491 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT 517482 || ||||| || || || | || || ||| || || |||||| || ||||| || Sbjct 38490 TGGTTATCGGAGTAGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCT 38432 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 || | ||||| | ||| || ||||| || | ||||||||| || ||||| || Sbjct 38431 TGGGATGAGCACTGTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCAC 38372 Query 517543 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 517602 ||||| || | || || || | || || | | ||| ||| ||||| || || Sbjct 38371 ATCAAGGAGAAGAAGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTG 38312 Query 517603 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTA 517660 | |||||||| ||||| |||||||||||||| |||| | || || |||| || Sbjct 38311 GACGGCAGCACCGTATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTC 38254 Query 517661 CCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACT 517720 |||||||| |||| ||||| || ||| |||| || | || ||| || ||||| Sbjct 38253 CCATTGAAGAAATCCTGCAGAAGCTGCTGAACCCTAGGGATTCTAGTTGAACCACCAACA 38194 Query 517721 AATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC 517779 | |||| ||||| || ||| | || |||| |||| |||| | || || || Sbjct 38193 AGGACAACATCATGGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCAC 38135 Query 517780 GGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG 517839 || || | || || || | ||| ||| || || || | ||||| || | Sbjct 38134 AGGCTCCATACATTTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGAT 38075 Query 517840 AGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGA 517899 ||| || |||||| || || || | ||||||| |||||| |||||||| | | Sbjct 38074 GGTGGAATAGAAATCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGT 38015 Query 517900 AGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC 517959 || || || | | || || | |||||||| ||| || || || | || || | | Sbjct 38014 GGAGGAGAGGGTCCTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG- 37956 Query 517960 TGATTGATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA 518017 | || | | ||| | |||| ||||||||||| |||| ||| | | || Sbjct 37955 -GGTTCCCGCTGATATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACC 37897 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 || || || ||||| || || || || | | ||| | || | || ||| | || | Sbjct 37896 AGGCGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCA 37837 Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAA 518137 |||| || || |||| | | || | |||||| || |||||||| | |||||| Sbjct 37836 AAAATACCCTCCTCAATGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAA 37777 Query 518138 ATAAGTACATTCATTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGC 518190 || || || ||| | || | ||| || || ||||||||||| |||| || Sbjct 37776 ATGAGCACGTTCTTCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGC 37718 Query 518191 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 518250 |||||| ||||| ||||| || || | || |||||||||||| ||||| |||||||| Sbjct 37717 AGCAGCTGTTGGCTCATTGATGATACGCATAACATTAAGACCCGCAATAACACCTGCATC 37658 Query 518251 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||||| || || || || ||||| || || |||||||||||||| | ||| |||| Sbjct 37657 TTTAGTTGCCTGCCTCTGGGAATCATTGAAGTATGCAGGAACAGTGACAACAGCAT 37602 >seq21277 Length=58878 Score = 114 bits (126), Expect = 1e-19 Identities = 223/328 (68%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044 || |||||||| |||| ||| | | || | || || |||||||||||||| || Sbjct 49628 TTCCTCTTGAATTCTTGTACAAAGTGGTTGACCATGCGGTTGTCAAAATCTTCACCACCA 49569 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | || | || | || || | || | || | || || |||| | | || Sbjct 49568 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 49509 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 518161 | |||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 49508 GAAACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 49449 Query 518162 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 ||| || || ||||||||||| |||| ||| ||||||||||| || || || || | | Sbjct 49448 GTGGCCTTCTTGTCAAGACCATAGGCAATAGCTGCAGCAGTTGGCTCGTTGATGATGCGC 49389 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | ||||| ||||||||||| ||| ||||| || ||||| || || || || || || Sbjct 49388 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 49329 Query 518279 AAATATGCAGGAACAGTAATAACGGCAT 518306 || || ||||||||||| | ||| |||| Sbjct 49328 AAGTAGGCAGGAACAGTGACAACAGCAT 49301 >seq25059 Length=36308 Score = 105 bits (116), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 17006 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCGTTGTTTT---TC 16953 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| | |||||||| |||||||| ||||| | | ||| | Sbjct 16952 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGTTCATTTATAATGCGGAGAACTTCC 16893 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | || ||||| | ||| |||||||| || ||| || ||||| || || || |||||| Sbjct 16892 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 16833 Query 518288 GGAACAGTAA 518297 |||||||||| Sbjct 16832 GGAACAGTAA 16823 >seq3895 Length=18476 Score = 98.7 bits (108), Expect = 8e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 7487 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 7546 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 7547 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 7606 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 || ||||| | | || |||||||| |||| Sbjct 7607 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 7640 >seq24091 Length=9292 Score = 86.0 bits (94), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||| || |||| | | ||||| |||||| ||| |||||||| | || || || || Sbjct 5999 TCCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCAAGGTCGAAGATGAG 5940 Query 518143 TACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGC 518196 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 5939 GACGTTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGC 5880 Query 518197 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 518256 ||| || ||||| || || | || ||||| || |||||||| | || || || || Sbjct 5879 AGTAGGCTCATTGATGATACGCATGACATTGAGGCCAGCAATGACCCTAGCGTCCTTGGT 5820 Query 518257 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 || || || ||||| | ||| || || |||||||| || Sbjct 5819 AGCCTGCCTCTGTGAGTAGTTGAAGTAAGCAGGAACTGT 5781 >seq23805 Length=3120 Score = 86.0 bits (94), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||| || |||| | | ||||| |||||| ||| |||||||| | || || || || Sbjct 2374 TCCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCAAGGTCGAAGATGAG 2315 Query 518143 TACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGC 518196 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 2314 GACGTTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGC 2255 Query 518197 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 518256 ||| || ||||| || || | || ||||| || |||||||| | || || || || Sbjct 2254 AGTAGGCTCATTGATGATACGCATGACATTGAGGCCAGCAATGACCCTAGCGTCCTTGGT 2195 Query 518257 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 || || || ||||| | ||| || || |||||||| || Sbjct 2194 AGCCTGCCTCTGTGAGTAGTTGAAGTAAGCAGGAACTGT 2156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779552093296894