Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq12908 105 8e-18 seq13224 100 3e-16 seq12822 93.3 5e-14 seq19976 82.4 9e-11 >seq12908 Length=8614 Score = 105 bits (116), Expect = 8e-18 Identities = 278/412 (67%), Gaps = 13/412 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || || ||||| || || | || || || || ||||| || ||| Sbjct 4186 CGGTCGAAGCGCCCCGGCCGGAGCAGCGCCGCGTCGAGGATCTCCGGCCGGTTGGTGGCG 4245 Query 11563 GCAATGACTACAATGCCA--GTCTCATT-GTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || || || || | ||| ||| | | |||| |||||||| || ||||| |||||| Sbjct 4246 GCGATCACGACGACGCCGCCGTCGCCGCCGCCGAACCCGTCCATCTCGGTGAGCAGCTGG 4305 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATACCACCT-GCCGAACGCTTCTTAC 11677 || | |||||| || | ||| ||||| | || | | || |||| |||| | | Sbjct 4306 TTCAGCGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGATCCCCGCGCCG--CGCTGCCGCC 4363 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG--CCTGTTC 11735 | || ||||| ||||| |||||||| |||| ||||| | | || | || ||||| | Sbjct 4364 CCACGGCGTCTATCTCGTCGATGAAGACGAGGCACGGCGCGCTCGC-CTTGGCCCTGT-C 4421 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || || ||| ||| || || || ||||||||||| | ||| | | || Sbjct 4422 GAACAGGTCGCGCACCCGCGACGCGCCGACGCCGACGAACATCTCGATGAA-CTCGGAGC 4480 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 | ||| || | |||||| || | ||| || ||||| || || || || |||| Sbjct 4481 CGGACAGCGAGAAGAAGGGCACGCCGGCCTCGCCGGCGATCGCCTTGGCCAGCAGCGTCT 4540 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | ||||| || || | || | || || |||| ||||||| | ||||| Sbjct 4541 TCCCCGTCCCCGGCGGGCCGACCAGCAGCACGCCCTTGGGGATCCTCGCACC 4592 >seq13224 Length=26385 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || ||||||||||| Sbjct 16147 TGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCG 16088 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 16087 CGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTCGACGCAG 16028 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || || | ||| | ||||| ||| | ||||| Sbjct 16027 GCGAAGGCGACGAGCCGCTCGGCGAAGCGCTCGCCGC-CGTCGATCCATCGCATGGCCCA 15969 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 || |||||| || | | |||||| || | |||||| Sbjct 15968 GTCGGCCTTGCGGCGCACGGCGGGGACTGTGTCGATGGC 15930 >seq12822 Length=10151 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 2418 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCC 2477 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 2478 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAG 2537 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 2538 GCGAAGGCGACGAGGCGCTCGGCGAA 2563 >seq19976 Length=88842 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 58423 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 58364 Query 136777 GGGAACAGCTTTTAGATATATTTTT 136801 |||| || |||| | ||| ||||| Sbjct 58363 GGGACCAATTTTTTGTTATTTTTTT 58339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588787535042200