Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq10866 129 4e-25 seq10092 116 2e-21 seq7832 107 1e-18 seq1402 100 2e-16 seq2330 98.7 6e-16 seq7833 96.9 2e-15 seq5881 96.9 2e-15 seq11087 89.7 3e-13 seq17239 86.0 4e-12 >seq10866 Length=43988 Score = 129 bits (142), Expect = 4e-25 Identities = 166/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| ||| | || | ||||| ||| |||||||||||||| || || | Sbjct 18836 CCTCCCCTCAGCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCG 18895 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTT-CCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| | ||| | || || || || ||| || ||||| || || || |||||||| | || Sbjct 18896 AGGGTGCGTCCGTCCTCAAGTTGCTTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGG 18955 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | ||||||||||| |||||| ||||| | |||| || || |||||| Sbjct 18956 AATTCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGCCAGAGGACTCAAC 19015 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||||||||| || || ||||| |||||||||||||||||||| Sbjct 19016 CTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 19063 >seq10092 Length=22630 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| ||||| | | || ||| | ||||| ||| || ||||| ||||| ||||| | Sbjct 17495 TTCCACCCCTTAGGCGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 17436 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | | |||| |||||||| || |||||||| || || || ||||||||| | | Sbjct 17435 CGAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGGTCTGGGG 17376 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| |||||| || ||| | |||| || | ||||| Sbjct 17375 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCTGATGACTCAA 17316 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||| || || || || |||||||||||||||||||| Sbjct 17315 CCTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 17267 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| | || |||| || ||||| || || || || Sbjct 17003 TTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAA 16944 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| ||||| || || Sbjct 16943 GATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATT 16884 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || || |||||| || | ||||||||| || || |||||||||||||| Sbjct 16883 GTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCAC 16824 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 16823 AAAGATCTGCAT 16812 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| | |||| | || |||| ||| Sbjct 17703 ACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCC 17644 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || |||| |||||||| | || | |||||||| || Sbjct 17643 AGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 17584 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | || | || | |||||| || | ||| || || || Sbjct 17583 ATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTG 17524 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||||||||| || || |||||||| Sbjct 17523 CCAGTGAGAGTCTTGACGAAAATCTGCAT 17495 >seq7832 Length=9206 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | |||| | || |||| || ||||| || ||||| || Sbjct 220 TCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 161 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | |||||||| || ||||| || ||| Sbjct 160 ATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTG 101 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || |||||| || | || ||||| || || ||||| |||||||| Sbjct 100 TCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACG 41 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 40 AAGATCTGCATA 29 >seq1402 Length=13741 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || |||||||| || ||||| || Sbjct 4568 TCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAG 4509 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||||||| | |||| |||||| | Sbjct 4508 ATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACG--T 4451 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || | | ||| || || | || ||||| || ||||| || ||||||| Sbjct 4450 TCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCA 4391 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 4390 CGAAGATCTGCAT 4378 >seq2330 Length=21218 Score = 98.7 bits (108), Expect = 6e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || |||||||| || ||||| || Sbjct 4246 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAG 4305 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||||||| |||||| || ||| Sbjct 4306 ATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG 4365 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || || | || || || || ||||| || |||||||| Sbjct 4366 TCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACG 4425 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 4426 AAGATCTGCATCTT 4439 >seq7833 Length=8852 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| |||||||| |||| || | || |||| || ||||| || || || || Sbjct 8588 TCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAG 8529 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||||||| | || | ||||||||||| |||||| || || Sbjct 8528 ATAAGGCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTG 8469 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || |||||| || | ||| ||||| || || ||||| ||||| || Sbjct 8468 TCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACG 8409 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 8408 AATATCTGCAT 8398 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | |||| | || |||| || ||||| || || ||||| Sbjct 8816 TCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAG 8757 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| || || || Sbjct 8756 ATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCAC--AT 8699 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| || || ||| || || | ||| ||||| || || ||||| ||||| Sbjct 8698 --TATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCTT 8641 Query 34967 CACAAAGATCTGCAT 34981 ||| || || ||||| Sbjct 8640 CACGAATATTTGCAT 8626 >seq5881 Length=10397 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| | ||| | ||| |||| ||| Sbjct 10169 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCATCCTCC 10228 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||||||| | || | |||||||||||| Sbjct 10229 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 10288 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || || || |||| || ||| | |||||| || | || ||||| Sbjct 10289 ATCTTGGCCTTCAC--AT--TATCAATGGTGTCAGAGCTCTCAACCTCCAAAGTGATGGT 10344 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | |||||||| |||||||||||| Sbjct 10345 CTTCCCAGTCAAGGTCTTCACGAAGATCTGCATA 10378 >seq11087 Length=17449 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| || ||||| || ||||| || Sbjct 11940 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 11881 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||| |||||||| ||||| || ||| Sbjct 11880 ATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTG 11821 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || || | || ||||| || ||||| || |||||||| Sbjct 11820 TCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACG 11761 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 11760 AAGATCTGCATCTT 11747 >seq17239 Length=15006 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| | |||| | ||| | || || ||||| || |||||||| Sbjct 3588 TCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAAAG 3647 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||| || |||||| || || || Sbjct 3648 ATAAG-CGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCAC--AT 3704 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | ||| || || | ||| |||| || || || || || || Sbjct 3705 --TGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTT 3762 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 3763 CACAAAGATCTGCAT 3777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324532318273272