Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3701 114 1e-20 >seq3701 Length=12561 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | | ||| || ||||| ||| Sbjct 7889 CCGCCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCCA 7830 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||| ||||| ||| ||||||| ||||| |||||| Sbjct 7829 TTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGAG 7770 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || ||||| || ||| ||| |||||| | || |||||||||||| Sbjct 7769 AGACCAATTCCACCAGCACATTTGCTTATGGTAGCACATTCTGAGAGAGTATCATAAATT 7710 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 7709 CCCTCAATGCTATCATCTTTCAT 7687 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA-ACAATT 48657 ||| || | ||| || | ||||| || |||||| ||||||| | |||| | | ||| Sbjct 7573 AGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAG--CGCTGAGACATAATG 7516 Query 48658 TA-TATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCAT 48715 | || |||| ||| |||| || ||||| | ||| ||||| || ||||| || | ||| Sbjct 7515 TGGTACGTTTTGATAGCAGATTCAATATCATCCTTG-TGTATCCCAATAGAAACTCTCAT 7457 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 || ||||| || |||||||| |||| || | | ||| || ||||| ||| | || Sbjct 7456 TAGCATATGCTGTGGTCTTTCCACAACCTTCCCAACAACTTTTAACAGATAAGATCTCTC 7397 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 | || ||||||||||| |||| || ||| || | |||| ||| || Sbjct 7396 AAGGGTCTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATAAATTAT 7346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561928932210360