Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6410 116 3e-20 seq25059 114 1e-19 seq6022 107 2e-17 seq3895 107 2e-17 seq10641 100 2e-15 seq24091 91.5 1e-12 seq23805 91.5 1e-12 >seq6410 Length=44208 Score = 116 bits (128), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || ||||| || | ||| |||||||||| |||||| | || || ||| | | || Sbjct 37514 AAGCAATTCTCTGCCGAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCT 37573 Query 550370 AGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 |||| | || |||| || | | |||| || | ||||| || ||||| || || Sbjct 37574 GAAGCTTACCTAGGGTCAACT-GTGAAGAATGCTGTTGTCACTGTTCCTGCATACTTCAA 37632 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| || || | || || ||||||||||| || |||||| || ||||||||| | || Sbjct 37633 TGATTCCCAGAGGCAGGCAACTAAAGATGCAGGTGTTATTGCGGGTCTTAATGTTATGCG 37692 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| |||||||| || || ||||||||| |||| ||||| ||||| || Sbjct 37693 TATCATCAATGAGCCAACAGCTGCTGCAATTGCTTATGGTCTTGACAA 37740 >seq25059 Length=36308 Score = 114 bits (126), Expect = 1e-19 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | ||||| || ||||| || ||||||||||| | ||| | Sbjct 16805 AAATTACCAAAGCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAA 16864 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||||||||||||||| ||| | | ||||| || ||||| |||||||| |||| Sbjct 16865 CAAAAGATGCTGGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAACCGACTG 16924 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | ||||| ||||| |||| || Sbjct 16925 CTGCATCCCTTGCTTATGGTTTTGAGAA 16952 >seq6022 Length=17457517 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | || ||||| ||||| || |||||| Sbjct 638227 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 638168 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || || ||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 638167 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 638108 Query 550520 GCATATGGA 550528 | |||||| Sbjct 638107 TCTTATGGA 638099 >seq3895 Length=18476 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||||||||| | || ||||| || || || |||||| Sbjct 7614 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 7555 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 7554 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 7495 Query 550520 GCATATGGA 550528 | |||||| Sbjct 7494 TCTTATGGA 7486 >seq10641 Length=15296 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || || ||||||||||| |||||||||||| | ||| | Sbjct 7371 AAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCGA 7430 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||| || || || || || ||||||| Sbjct 7431 CAAAAGATGCTGGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTG 7490 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || | | |||||||| |||| || Sbjct 7491 CAGCATCTTTGGCATATGGGTTTGAAAA 7518 >seq24091 Length=9292 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 |||| || || || || || || ||||||| | || ||||| || || ||| | | Sbjct 5779 TAACAGTTCCTGCTTACTTCAACTACTCACAGAGGCAGGCTACCAAGGACGCTAGGGTCA 5838 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 ||||||| || ||||| | ||||| |||||||| |||||||||||||| |||| |||| Sbjct 5839 TTGCTGGCCTCAATGTCATGCGTATCATCAATGAGCCTACTGCTGCTGCCATTGCCTATG 5898 Query 550527 GACTTGATAA 550536 | ||||| || Sbjct 5899 GTCTTGACAA 5908 >seq23805 Length=3120 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 |||| || || || || || || ||||||| | || ||||| || || ||| | | Sbjct 2154 TAACAGTTCCTGCTTACTTCAACTACTCACAGAGGCAGGCTACCAAGGACGCTAGGGTCA 2213 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 ||||||| || ||||| | ||||| |||||||| |||||||||||||| |||| |||| Sbjct 2214 TTGCTGGCCTCAATGTCATGCGTATCATCAATGAGCCTACTGCTGCTGCCATTGCCTATG 2273 Query 550527 GACTTGATAA 550536 | ||||| || Sbjct 2274 GTCTTGACAA 2283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027942209428510