Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq10866 109 4e-19 >seq10866 Length=43988 Score = 109 bits (120), Expect = 4e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || || || || || |||||||| || | || | | |||| || | ||||| || Sbjct 18409 GGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCCATCCTCGAGCTGCTTGCC 18468 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 ||||| |||| ||||| ||||| || ||||||| || || || ||||| ||| ||| Sbjct 18469 AGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTTGTCCTGAATCTTTGCTTT 18528 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | ||||| |||| || || || || || | ||||||||||| || || Sbjct 18529 TACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTTTTGCCGGTCAATGT 18588 Query 101452 TTTTACAAATATCTGCAT 101469 || ||||| || ||||| Sbjct 18589 CTTGACAAAGATTTGCAT 18606 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||||||||||| || || || |||||||| || || | | | | || || Sbjct 18626 ACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCAGCCAGGGAGCGTCCGTCCTCG 18685 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || || ||||| || || | || ||||| || || || ||| Sbjct 18686 AGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCCGGGGGATGCCCTCCTTGTCCTGA 18745 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || ||||| | || || ||||| || | || || Sbjct 18746 ATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAATGGTCTTT 18805 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | || || ||||| ||||||||| Sbjct 18806 CCGGTCAGGGTCTTGACAAAAATCTGCATG 18835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396154765968843