Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq10866 95.1 9e-15 seq10092 95.1 9e-15 seq2330 87.8 1e-12 >seq10866 Length=43988 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | ||| | || || || ||| || || |||||||| |||| Sbjct 18608 CCACCCCTGAGCCTGAGCACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCAGCC 18667 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || || |||| || | |||||| ||||| || || | ||||| || ||| ||| Sbjct 18668 AGGGAGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCCGGGGG 18727 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || ||| | | | || || | ||| ||| Sbjct 18728 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGACC 18787 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | |||||| || ||||| |||| || || |||||||||||||| Sbjct 18788 TCAAGCGTAATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 18834 >seq10092 Length=22630 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||||||| |||| || | || || ||| ||| || || || ||||| |||| Sbjct 17493 CCACCCCTTAGGCGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 17434 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || |||| |||||| |||||||| || || ||||| || || | |||| Sbjct 17433 AGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGGTCTGGGGGA 17374 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || || | | | ||||| | ||| ||| Sbjct 17373 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCTGATGACTCAACC 17314 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | |||||| || || || || | || || ||||| |||||||| Sbjct 17313 TCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 17267 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||||| ||||| || ||| || ||||| ||||| || | Sbjct 17721 CCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCA 17662 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| ||||||||| || || || |||| ||| || |||| ||| Sbjct 17661 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGG 17602 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || ||||| || || | | | ||||| ||| ||| Sbjct 17601 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACC 17542 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || | ||| || || ||||||||||| Sbjct 17541 TCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 17495 >seq2330 Length=21218 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || || ||| || || || ||||| || | Sbjct 4208 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 4267 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| |||| |||||| ||||| || || || ||||| || || | | Sbjct 4268 CGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCG 4327 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| ||||| || || | | | || || | ||||| Sbjct 4328 GGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 4387 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| ||||| || ||||||| || || || || ||||||||| || Sbjct 4388 CCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 4440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380818752111477