Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12822 255 1e-62 seq13224 221 2e-52 >seq12822 Length=10151 Score = 255 bits (282), Expect = 1e-62 Identities = 585/871 (67%), Gaps = 35/871 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 2114 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 2173 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCA-- 47954 ||| || ||||||||||| ||| |||| | | || ||| || | || ||| Sbjct 2174 CATCCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTG-CAG-CCGA---GTGCCATG 2228 Query 47955 -GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | ||| | || |||||| | |||||||| | ||||||| | ||||||||| | | Sbjct 2229 AGGAGGCGGTCGGCGACGAATTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACG 2288 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || | ||||| | || | || |||||| |||| || | ||||| || | || Sbjct 2289 AGCGCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACG 2348 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| ||||| | ||| | | ||| ||| ||| | | | ||||| | |||| Sbjct 2349 ATCTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAG 2405 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || Sbjct 2406 GCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCC 2465 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| ||||| || ||||||||||| || || ||| ||||| ||||||||||| Sbjct 2466 GGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATC 2525 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGAT 48312 ||||| || ||||| ||| ||| | ||| | |||||| || | | ||| Sbjct 2526 CCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGAT 2581 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCC 48368 |||| | |||||||| ||||| | ||| ||| | || || ||||| | Sbjct 2582 CCAGCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCCGGGACGGTGTCGATGGCGC 2637 Query 48369 GGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGT 48425 |||| ||| | ||| ||| | |||| | ||||| ||||||| | || Sbjct 2638 GGAACAGCCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGT 2694 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 ||||||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| Sbjct 2695 ACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGGCGCGCGCCTCGG 2754 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 |||||||| || | ||| || || ||||| || || || || || | Sbjct 2755 CGACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGG 2814 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCAT 48602 | || |||||||| || || || | ||| |||||||||| | ||| || || | Sbjct 2815 CGGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGACAGCGCGGCGT 2874 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | |||| | |||||||| || ||| | |||||||| ||||| | | Sbjct 2875 CCCAGTGGCGCGCGTCGGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCACCG 2934 Query 48663 CTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | || ||||| | |||| || | ||| || Sbjct 2935 CCTTCTTGTAGAACTCCCAGATCTGCGGGTA 2965 >seq13224 Length=26385 Score = 221 bits (244), Expect = 2e-52 Identities = 575/868 (66%), Gaps = 29/868 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 16451 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 16392 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | || || || | | ||| Sbjct 16391 CATCCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTG-CAC-CCGAGCGCCATGAGC 16334 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || | || |||||| |||||||||| | |||||| | |||||| || | ||| Sbjct 16333 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 16274 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || |||||| |||| || | |||||| || | || ||| Sbjct 16273 GCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATC 16214 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | || ||||| ||||| | | ||| ||| ||| | | | ||||| | |||||| Sbjct 16213 TCCTGGACGCGTGACTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAGGCG 16157 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | || ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 16156 AAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 16097 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| || || ||||||||||| ||| Sbjct 16096 ATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCC 16037 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||| ||| ||||| ||| | |||||| || | | |||||| Sbjct 16036 TCGACGCAGGCGAAGGCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCA 15981 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | |||||||| ||||| | ||| ||| | || || ||||| |||| Sbjct 15980 TCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGACTGTGTCGATGGCGCGGA 15925 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | |||| | || || |||||| | ||||| Sbjct 15924 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTACGTCTCGAGCAGAAGCGAGTACA 15868 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| | Sbjct 15867 TCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGA 15808 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || || | ||| || || ||||| || || ||||| || || | Sbjct 15807 CCTGAACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCATCGGAGGCCG 15748 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | ||| |||||||||| | | | || || | || Sbjct 15747 CGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCGGGCGACAGCGCGGCGTCCC 15688 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || ||| | |||||||| ||||| | || | Sbjct 15687 AGTGGCGCGCGTCGGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCACCGCCT 15628 Query 48666 TTTTGTACATGCCCCATATGTCCGGATA 48693 | ||||| | |||| || | ||| || Sbjct 15627 TCTTGTAGAACTCCCAGATCTGCGGGTA 15600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931234721148160