Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq13224 210 4e-49 seq12822 190 4e-43 >seq13224 Length=26385 Score = 210 bits (232), Expect = 4e-49 Identities = 501/741 (68%), Gaps = 34/741 (5%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| ||||| || ||| |||||| || | || | Sbjct 15730 ACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGT 15789 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| || || ||| || ||||| |||||||| |||||||| ||||||| Sbjct 15790 TCATGTCCGACGTTCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCG 15849 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCG 25771 | || | ||||| ||| |||| | ||||||| | ||||||||| |||| || Sbjct 15850 AGAACATCCACTCAGAGATGTACTC---GCTTCTGCTCGAGACGTACATCCGCGACGACG 15906 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG-AAGGCG 25830 ||||| || || || || | |||||||| |||| ||| || | | ||||| Sbjct 15907 TCGAGAAGGACCGCCTCTTCCGCGCCATCGA-CACAGTCCCCGCCGTGCGCCGCAAGGCC 15965 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||||||| |||||| || || ||||||| || ||||||||| || || Sbjct 15966 GACTGGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGGCTCGTCGC 16021 Query 25890 CTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 ||| || ||| || ||||| ||||| ||| ||||| || |||| |||||||||||||| Sbjct 16022 CTTCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCG-CCATCTTCTGGCTC 16079 Query 25948 AAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || | |||| |||||| || || ||| ||||||||||||||| | | ||||| Sbjct 16080 AAGAAG-CGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGA 16138 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 |||||||||| | || || |||||||| |||||| | || | | | | | || || Sbjct 16139 GGGTCTCCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGC-AAGCTCG 16194 Query 26067 TCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 | || || |||| | ||| || || || ||||| ||||||| |||||| Sbjct 16195 ACGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCT 16254 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | || |||||| | ||||||||||| ||||| | Sbjct 16255 GCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCG 16314 Query 26186 AGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTAC 26240 ||| || ||||||| ||||| || | ||| || || ||| | |||| || | Sbjct 16315 AGTTCGTCGCCGACCGGCTGCTCATGGC-GCTCGG--GTGCAAGAAGATGTACAACGT-C 16370 Query 26241 GCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 ||| ||||||||||||| ||||| ||| || || | || |||||||||||||| || Sbjct 16371 GCC-AACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGA 16429 Query 26301 AAAGAGGGTCGGCGACTATCA 26321 ||| | ||||||||||| || Sbjct 16430 GAAGCGCGTCGGCGACTACCA 16450 >seq12822 Length=10151 Score = 190 bits (210), Expect = 4e-43 Identities = 567/860 (66%), Gaps = 33/860 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| || || ||| | || || Sbjct 2956 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTC 2897 Query 25537 GCCAAGGACATGGACGGCTGGTA---CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| | ||| || ||| ||||||| || || || Sbjct 2896 TCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCCCCGACGAGCGCCACTTCATCTCC 2837 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 2836 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 2777 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||| |||||||| |||||||| |||||| Sbjct 2776 TTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATC 2717 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||| || ||| ||||| |||| |||| Sbjct 2716 GAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCC 2657 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAG-CATCAAGAGGAAGGCGCG 25832 |||| || |||||||| | |||||||| ||| ||| | | | | ||||| Sbjct 2656 GAGAAGGACCGGCTGTTCCGCGCCATCGA-CACCGTCCCGGCCGTGCGCCGCAAGGCCGA 2598 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| |||||| || || |||||| || | |||||| || || |||| Sbjct 2597 CTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCT 2542 Query 25892 TTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | | |||| || ||||| ||||| ||| || || || ||| ||||||||||||||||| Sbjct 2541 TCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGC-GCCATCTTCTGGCTCAA 2484 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || |||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 2483 GAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 2424 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 || ||| | || || |||||||| |||||| | || | | | | ||| | || | Sbjct 2423 CCTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGCAAGC--TC-GA 2370 Query 26070 AGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 ||| | |||| | ||| || || || || || ||||||| |||||| Sbjct 2369 CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTG 2310 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||||||| ||||| || Sbjct 2309 CGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGA 2250 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACG 26241 | || ||||||| || || || || || || || || ||| | |||| || || Sbjct 2249 ATTCGTCGCCGACCGCCTCCTCATGGCA-CTCGG-CT-GCAAGAAGATGTACAACGT-CG 2194 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 || ||||| ||||||| ||||| ||| || || | || |||||||||||||| || Sbjct 2193 CC-AACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAG 2135 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||| | ||||||||||| || Sbjct 2134 AAGCGCGTCGGCGACTACCA 2115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928547581274560