Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6410 134 9e-26 seq25059 104 2e-16 seq7833 104 2e-16 seq3895 96.9 2e-14 seq10092 91.5 1e-12 seq6022 91.5 1e-12 seq10866 87.8 1e-11 seq21277 86.0 4e-11 >seq6410 Length=44208 Score = 134 bits (148), Expect = 9e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| ||||| || |||||||| || | || ||||||||||||| Sbjct 37602 ATGCTGTTGTCACTGTTCCTGCATACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 37661 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| |||||||||||| | ||||| || ||||| |||||||| || ||| Sbjct 37662 CAGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCAACAGCTGCTGCAA 37721 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 37722 TTGCTTATGGTCTTGACAAGAA 37743 >seq25059 Length=36308 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||| ||||| || ||||| || || | |||||| |||||||| Sbjct 16816 GCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAACAAAAGATGCT 16875 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 ||| | |||||||| | | ||| | || ||||| |||||||| || || || | ||| Sbjct 16876 GGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAACCGACTGCTGCATCCCTT 16935 Query 474857 GCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| ||||| Sbjct 16936 GCTTATGGTTTTGAGAAGAA 16955 Score = 93.3 bits (102), Expect = 3e-13 Identities = 208/308 (68%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATT-ATGAC 475935 || ||| |||| || |||||| | || | ||||| || || ||||| ||| | ||||| Sbjct 19511 GTTCTTCTTGATGTTACTCCATTGTCTCTTGGTCTGGAGAC-GTTGGGTGGAGTGATGAC 19569 Query 475936 TAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTA 475995 || ||||| |||||| || | | || | ||||||| | ||||| ||||| Sbjct 19570 CAAGATTATTCCCAGAAACACAACACTGCCCACCTCAAAATCAGAGGTATTCTCCACAGC 19629 Query 475996 TTCTGATAATCAAACAACTGTAACCATCCAAATCTT--TGAAGGTGAAAGAAAATTCACT 476053 | | ||| || |||| ||| || |||| || | | || || ||| | || Sbjct 19630 TGCAGATGGACAGACAAGTGTTGAGAT--AAATGTTCTTCAGGGAGAGAGAGAGTTTGTC 19687 Query 476054 AAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113 || || || ||||||| || | || || || |||||||| || | || Sbjct 19688 CGGGACAACAAGTCTCTTGGAAGCTTCCGCTTGGATGGAATCCCTCCTGCACCACGTGGT 19747 Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| ||||||||||| | |||||||||||||| ||||||||||| |||| ||||| Sbjct 19748 GTTCCACAAATTGAAGTCAAGTTTGATATTGATGCCAATGGTATTCTCTCTGTTGCTGCT 19807 Query 476174 TGTGATAA 476181 |||||| Sbjct 19808 ATTGATAA 19815 >seq7833 Length=8852 Score = 104 bits (114), Expect = 2e-16 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| ||||| ||||| || | ||| ||| | | || |||||||| || ||| Sbjct 8619 ACGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATG--TTATAATCCGCGAGA 8562 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | ||| ||||| ||||| ||||| || ||||| ||||| || || ||||| || Sbjct 8561 GTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGAGGGATG 8502 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTC 480727 || |||||||| |||||||| || ||| ||||| ||||| | | | || | | Sbjct 8501 CCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCC 8442 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| | || || || || ||||| ||||||||||| || || Sbjct 8441 AAGG-TGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTG 8401 >seq3895 Length=18476 Score = 96.9 bits (106), Expect = 2e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || ||||| |||||||| |||||||||||| |||| ||||| ||||| || ||||| Sbjct 7614 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 7555 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| |||| | || || ||||||||||| || || || || Sbjct 7554 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 7495 Query 474857 GCTTATGG 474864 ||||||| Sbjct 7494 TCTTATGG 7487 >seq10092 Length=22630 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || ||||| |||||||| || || ||| || | || || ||||| || || Sbjct 17032 CGGAGGCGGAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTG 16973 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || ||||| ||||| || || ||||| || || || || || ||||| Sbjct 16972 CGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCC 16913 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || ||||| || ||| ||||| ||||| | | | |||||| Sbjct 16912 TCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGG 16853 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||||||||| || || || || Sbjct 16852 GTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTG 16815 Score = 91.5 bits (100), Expect = 1e-12 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| ||||| ||||| || || || | || || ||||| || || || Sbjct 17256 AGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTA 17197 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||| || ||||| || || || || ||||| || ||| Sbjct 17196 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGG-GGAATCCCCTCC 17138 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| || |||||| || || ||||||||||||| | | || |||||||| Sbjct 17137 TTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA-CCTCAAGGGT 17079 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || | ||||| || || ||||| Sbjct 17078 GATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTG 17043 >seq6022 Length=17457517 Score = 91.5 bits (100), Expect = 1e-12 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 ||||| |||| ||||| | || || || || |||||| || || | | || Sbjct 638284 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 638225 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || |||||||||||||| ||||| |||||| |||| ||||| || || || ||||| || Sbjct 638224 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGT 638165 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | || || || ||| |||| | | || || |||||||| || || || || || || Sbjct 638164 CGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTGTCT 638105 Query 474860 TATGG 474864 ||||| Sbjct 638104 TATGG 638100 >seq10866 Length=43988 Score = 87.8 bits (96), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620 || ||||| ||||| || ||||| || || ||||| || || || | || Sbjct 18851 AGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGTCCGTCC 18910 Query 480621 TCAAGTTGCTTT-CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTC 480679 |||||||||||| || ||||| || || || || || ||||| |||||||| |||||||| Sbjct 18911 TCAAGTTGCTTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATTCCCTCCTTGTC 18970 Query 480680 TTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGT 480739 |||||||| |||||| ||||| || ||| | | || ||||| || || Sbjct 18971 CTGAATCTTGGCCTTGACATTGTCAATCGTGCCAGAGGACTCAACCTCTAGGGTTATGGT 19030 Query 480740 TTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| || || || || Sbjct 19031 CTTGCCAGTGAGTGTCTTCACAAAGATCTG 19060 >seq21277 Length=58878 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || ||||| || || | || || || || |||| Sbjct 49301 ATGCTGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 49360 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| ||||| | || || || || || ||||| || || || Sbjct 49361 CTGGAGTGATTGCTGGTCTCAATGTCATGCGCATCATCAACGAGCCAACTGCTGCAGCTA 49420 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 49421 TTGCCTATGGTCTTGACAAGAA 49442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267081134683652