Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq17345 138 3e-27 seq11107 138 3e-27 seq13116 111 5e-19 seq11955 96.9 1e-14 seq6944 95.1 4e-14 seq8332 93.3 1e-13 seq593 93.3 1e-13 >seq17345 Length=14277 Score = 138 bits (152), Expect = 3e-27 Identities = 238/342 (70%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 6408 ATTTCTTACCGTACCATCATATTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 6467 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || ||||| |||||||| ||||| | | |||||| Sbjct 6468 CTGGATATATCCAGTCTCAGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 6527 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 6528 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGACCTCTAAGGTAAGAGTTCTCCACAAA 6587 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 ||||| || || || || || || ||||| |||| || | | || | | Sbjct 6588 CCCACGACTTTCAGGACCATAATCATCTTTTGTGAAGTGGGGCAACGTTC-GATCGATGA 6646 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 |||| ||||||| ||||| || ||||| ||||||||||| | || | | |||| || Sbjct 6647 -AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGA 6705 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||||| | ||| || || ||||| ||| | |||||| Sbjct 6706 GAAATATTGATGAAACTTCCTTTTGAGCCTGCAGTAACCATA 6747 >seq11107 Length=22563 Score = 138 bits (152), Expect = 3e-27 Identities = 214/306 (70%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||| || ||||||||| ||| | | || || Sbjct 7978 ATTTCTAACAGTACCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 8037 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| |||||| || || || ||||| |||||||| ||||| | | |||||| Sbjct 8038 CTGGATATATCCAGTTTCCGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 8097 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 8098 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACAAA 8157 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || || || ||| || || |||||||||| || | || | Sbjct 8158 CCCACGACTTTCAGGACCATAGTCATTTTTCGTGAAGTGTGGCAATGTTCGATTGGTGAA 8217 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||| ||||||| ||||| || ||||| ||||||||||| | || | | ||||||| || Sbjct 8218 GCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATCTGTGA 8277 Query 302838 AATATT 302843 |||||| Sbjct 8278 AATATT 8283 >seq13116 Length=53864 Score = 111 bits (122), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 156038 CATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATT 156094 ||||| || ||||| || |||||||| ||| ||||| ||||| || ||||| | ||| Sbjct 9194 CATAG--AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATT 9251 Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA 156154 ||| |||| ||||||||||| ||| |||||||| || ||||| ||||| || |||| Sbjct 9252 GAAAACACGTAGCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCACGGATATAGCT 9311 Query 156155 ACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214 |||| | |||| ||| |||| || ||||| || || | |||| || Sbjct 9312 CCCAGTAGCTCGAATATTGTGAACTGATACACCAATTCCTCCAGCAGATTTGCTTATGAC 9371 Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| |||||||| | ||||| | || || ||||| ||||||| ||| Sbjct 9372 AGCACATTCCTTCAAAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 9422 >seq11955 Length=56487 Score = 96.9 bits (106), Expect = 1e-14 Identities = 316/473 (67%), Gaps = 20/473 (4%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCC 288944 ||||| || ||||| || || || |||| ||||| ||||| ||| | | ||| || Sbjct 22823 ATATCAGCCCTGTTGGTGGCAGC-AATA--ACAAT-GATTCCAGTGTTCCCCTCAAAACC 22878 Query 288945 ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGA 289004 |||||| || | | ||||| | || || ||||||||||||||| ||| | | Sbjct 22879 ATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACC--A 22936 Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || ||| | || ||| ||| | ||||||||||||||||| |||| || | | || Sbjct 22937 AT-ACCTG--TCCCTC-TTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTATGCA 22992 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 |||| ||| | | || | || | || | || ||||| || |||| || || Sbjct 22993 AGGAGCATTCTCCTTTGCCTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCCGAC 23052 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | |||| || ||||| ||||| | |||| | || | || | ||| ||||| |||| Sbjct 23053 AAACATCTCCACAAACTCAGATCCTGATA-TCGAGAAAAACGGCACACCAGCTTCCCCTG 23111 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | ||| | || || | |||||||| |||||||| || || | | ||||| |||| Sbjct 23112 CAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGGAGGACCAACAAGCAGAACACCCT 23171 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | || ||| ||| | | | || || |||| || || || || | || Sbjct 23172 TAGGGATGCGAGCACCAACAGCGGTGAACCTTTCTGGTTTCTTCAAGAACTCAACCACTT 23231 Query 289304 CC-TCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 || | ||| || | ||||| ||||| ||| || || |||||| |||| |||| Sbjct 23232 CCATGAAG-TCTTGCTTTGCTTCATCGACA-CCAGCAACATCATCAAATGTAA 23282 >seq6944 Length=13497 Score = 95.1 bits (104), Expect = 4e-14 Identities = 207/303 (68%), Gaps = 14/303 (5%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || ||||| |||||||| | || |||||||| ||||| |||||| |||| ||| | Sbjct 10246 GCAATAAGCCCACACTTCTCGCATACATGGACTCTGTACGCATCACTCTGGTCAAATAAC 10187 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCG---TGTGAAATCATACAATCACGCTCCATTTCA 251520 | |||| ||| | ||||| || || | ||||||||| || | |||||| || Sbjct 10186 CTTTCCTTAAGGAA---AAATGCAGCGCCATGAGCAATCATACAGTCCCTCTCCATCTCT 10130 Query 251521 CCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACC 251580 || || || |||||||||||||| | | ||||| ||||| || | || || | | Sbjct 10129 CCAAACCGGAGACCACCATCGCGTGAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGC 10070 Query 251581 ATAGGACCGATGGAGCGGCTA---TGTTGCTTATCATTTACCATATGCTTGAGACGCTGG 251637 | |||||| | | || ||| || ||| |||| ||||| ||||| || | |||| Sbjct 10069 ACAGGACC-ACG--GCCTCTAGAGTGAATCTTGTCATCCACCATGTGCTTAAGTCTCTGG 10013 Query 251638 TAGAATGCGGGACCGATGAAGATGCTCGAAG-GCATTTGCTCTCCAGTTAGAGCGTTATA 251696 || | | ||||| | ||| || | | || |||| || |||||| || |||| || Sbjct 10012 TAATAAGTAGGACCAAGGAAAATCATGGCAGTTAATTTTCT-TCCAGTGTGACCGTTGTA 9954 Query 251697 CAT 251699 ||| Sbjct 9953 CAT 9951 >seq8332 Length=66386 Score = 93.3 bits (102), Expect = 1e-13 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATT 289086 ||| |||||||||| ||| ||||||||||| | | | || | | || | | || || Sbjct 32549 ACCCACAGCATCAAGTTCATCAATGAAAATTATAGATGGGGCAGCTTCTTTGGCCTCCTT 32608 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | ||||| || |||||||||| |||||| ||||| | | ||| ||||||||| | Sbjct 32609 G--AATAAATCCCTTACACGGGCTGCTCCTCTTCCAACGAAAACTTCAACAAATTCACTA 32666 Query 289147 GCGGATACTTGAATGAATGTTACATT--TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || || || || || | | ||| || || ||||| |||||||| |||||||| | Sbjct 32667 GCAGAAAC-AGAGAAAAAGGGA-ATTCCAGCCTCTCCTGCAACTGCCCTTGCCAGAAGAG 32724 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || || ||||| || || || | | ||||| ||| | |||| ||| || || Sbjct 32725 TTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCC 32779 >seq593 Length=54265 Score = 93.3 bits (102), Expect = 1e-13 Identities = 211/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 ||||||||||| |||||||| | | || || ||| || | || | |||||| Sbjct 39585 GCATCAATTTCATCAATGAATACAATACTAGGTGAACACTGCCGAGCTTCTTGAAATAAG 39644 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 | | || | ||||| ||||| ||||||| ||||||| | || || ||| | || | | Sbjct 39645 TTCCGCACCCTGGATGGTCCAACACCAACAAACATTTCCATGAAGTCTGAACCAGA-AAT 39703 Query 289156 TGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 || | ||| | ||| | || ||||| || | || || || ||||| ||||| Sbjct 39704 AGACAAGAAGGGCACACCAGACTCTCCTGCAGTAGCTTTAGCAAGGAGAGTCTTTCCTGT 39763 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT-ATAT 289272 || || || || | | ||| | |||||||||| |||||| ||||| ||| |||| Sbjct 39764 GCCTGGGGGACCAACAAGAAGAGCACCCTTTGGTATTTTTGCTCCCAG--TTCTTCATAT 39821 Query 289273 TTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACAT 289332 |||| || | || | || | |||| |||| || ||| | ||| || |||||||| Sbjct 39822 TTCTTGGGATTTTTCAGGAAATGAACAAATTCCATAATTTCTTGTTTGGCTTCATCACAG 39881 Query 289333 CCTGCTACATC 289343 || |||||||| Sbjct 39882 CCAGCTACATC 39892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471334862684863