Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2330 109 5e-19 seq10092 100 3e-16 seq17239 95.1 1e-14 seq11087 95.1 1e-14 seq1402 89.7 5e-13 seq7832 82.4 7e-11 >seq2330 Length=21218 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || ||||| || || || || | Sbjct 4437 GATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTC 4378 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 4377 GGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCA 4318 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| ||||| || ||||||||||| | | | | | | || || || Sbjct 4317 GCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAA 4258 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| || ||||| ||||| || ||| ||||| | || | ||||| |||| Sbjct 4257 CATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGCGGCGGCG 4208 >seq10092 Length=22630 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || |||||||| || || || | | Sbjct 17267 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATCA 17326 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 17327 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 17386 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || |||||||| || |||||||||||| || | | | | || || ||| Sbjct 17387 CAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAAC 17446 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | || |||| Sbjct 17447 ATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCG 17481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || ||||| || || || || | || Sbjct 17723 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 17782 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| ||||| || || || || || Sbjct 17783 GATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 17842 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || |||||||| ||| | | | | | || || ||| Sbjct 17843 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAAC 17902 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| || || || ||| ||||| Sbjct 17903 ATTCAGAAGGAGTCTACCCTCCACCTGGTG 17932 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || || | Sbjct 16811 GATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATAACCCTTGAGGTTGAGTCCTC 16870 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | ||||| |||||||| ||||| || ||||| || || || || Sbjct 16871 GGATACCATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCA 16930 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || ||||| || ||| | | | | | || || || Sbjct 16931 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACGCTTGCTGACTACAA 16990 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| || |||||||| || || || |||| Sbjct 16991 CATCCAGAAGGAATCCACCCTCCATCTTG 17019 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || |||||||| || || || || | | Sbjct 17495 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTCA 17554 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || || || || Sbjct 17555 GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 17614 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || || || |||||||||||| | | | | | || || ||| Sbjct 17615 CAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAAC 17674 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| || || |||||||||||| Sbjct 17675 ATTCAGAAGGAGTCTACCCTACACTTGGTG 17704 >seq17239 Length=15006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || ||||| || | || || || || || || | | Sbjct 3778 GATGCAGATCTTTGTGAAAACCCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCATC 3719 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||||| | || | || || |||||||| || || || || || || || || || Sbjct 3718 CGACACAATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCA 3659 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || || ||||||||||| || ||||| ||||| | | | | | || || || Sbjct 3658 GCAGCGCTT-ATCTTTGCCGGCAAGCAGCTCGAGGAAGGACGCACCCTTGCTGACTACAA 3600 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||| ||||| ||||| || || |||| Sbjct 3599 CATTCAGAAGGAGTCGACCCTCCATCTTG 3571 >seq11087 Length=17449 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || ||||| || || || || | Sbjct 11749 GATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTC 11808 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 11809 GGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCA 11868 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| ||||| || ||||| |||||| | | | | | || || || Sbjct 11869 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAA 11928 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| || ||||| || || || ||| | ||| | || | ||||| |||| Sbjct 11929 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCG 11978 >seq1402 Length=13741 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || ||||| || || || || Sbjct 4377 GATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGAGCAG 4436 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | | | || || ||| | || ||||| || || || || || || || Sbjct 4437 CGACACGATCCAGAACGTCAAGGCGAAGGTGCAGGACAAGGAGGGGATCCCGCCGGACCA 4496 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| ||||| || ||||||||||| | | | || | || || || Sbjct 4497 GCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCCGACTACAA 4556 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| | || | ||||| ||| Sbjct 4557 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTCCGCGGCGGC 4605 >seq7832 Length=9206 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || || | Sbjct 30 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCT 89 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || ||||| || || Sbjct 90 GACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAG 149 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| |||||| | | | | | || |||||| Sbjct 150 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAAC 209 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | || |||| Sbjct 210 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCG 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449753638391720