Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq6022 1364 0.0 >seq6022 Length=17457517 Score = 1364 bits (1512), Expect = 0.0 Identities = 766/770 (99%), Gaps = 2/770 (0%) Strand=Plus/Minus Query 35186 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC 35245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567500 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC 1567441 Query 35246 TTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAA 35305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567440 TTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAA 1567381 Query 35306 AAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCA 35365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567380 AAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCA 1567321 Query 35366 GTTCACTTACACCGCTTCTCAACCC-GGTACGCACCAGAAAATCATTGATATGGCCATGA 35424 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 1567320 GTTCACTTACACCGCTTCTCAACCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGA 1567261 Query 35425 ATGGCGTTGGATGCCGGG-CAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTA 35483 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1567260 ATGGCGTTGGATGCCGGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTA 1567201 Query 35484 CGTCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACG 35543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567200 CGTCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACG 1567141 Query 35544 TCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGC 35603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567140 TCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGC 1567081 Query 35604 GCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTG 35663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567080 GCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTG 1567021 Query 35664 AACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGA 35723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567020 AACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGA 1566961 Query 35724 TATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAA 35783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1566960 TATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAA 1566901 Query 35784 TCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTAAATCTGAGGCAGCACCTGG 35843 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1566900 TCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGG 1566841 Query 35844 CACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCA 35903 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1566840 CACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCA 1566781 Query 35904 TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC 35953 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1566780 TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC 1566731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127065361893360