Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq10866 120 2e-22 seq12013 100 2e-16 seq7833 89.7 4e-13 >seq10866 Length=43988 Score = 120 bits (132), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||| || | ||||| || || || ||||| ||||| || | |||||| Sbjct 18391 ACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCC 18450 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||||||| | |||| | ||||||||||| ||||| | ||| || Sbjct 18451 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTT 18510 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| ||| || | || | ||||| || || || || || || | Sbjct 18511 GTCCTG-AATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAA 18569 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | |||||||| || || || || ||||| || |||||| Sbjct 18570 TGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 18607 >seq12013 Length=80356 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || ||||| |||||||| ||||| || Sbjct 64481 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGC 64422 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || ||||| || || || | |||| |||||||| || || || Sbjct 64421 TAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGGG 64362 Query 29679 AATACCCTCTTTGTCTTG 29696 ||||||||||||||| || Sbjct 64361 AATACCCTCTTTGTCCTG 64344 >seq7833 Length=8852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || || || |||||||||||||| | || || ||| || || || |||||| Sbjct 8594 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 8535 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TT 29708 || | || | | |||||| || || || || ||||| ||||| || ||| || | || Sbjct 8534 GCGAAGATAAGGCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTG-AATCTTAGCCTT 8476 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || || || || || | || || || |||||||| | ||| Sbjct 8475 CACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 8416 Query 29769 TTTAACAAATATCTGCAT 29786 ||||| ||||||||||| Sbjct 8415 CTTAACGAATATCTGCAT 8398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385099016304459