Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq6944 89.7 7e-13 >seq6944 Length=13497 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 201567 CGTATACCAGAAATTGGAGATAAATTTTGTTCT-GGAATGGCCCAAAAAGGAACTTGTGG 201625 ||||||||| | ||||| ||||| ||| || | || |||| | | ||||||||| || Sbjct 9468 CGTATACCACAGATTGGGGATAAGTTTAGTAGTAGGCATGGTC-AGAAAGGAACTGTGGG 9526 Query 201626 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCG--GGTATGACCCCGGATATT 201683 |||| |||| ||||||| || ||||||| || || | || || || || |||||| Sbjct 9527 AATGACTTATACACAAGAGGACATGCCGTGGACT--ATTGAAGGCATCACACCTGATATT 9584 Query 201684 ATAATCAATCCAAATTGTATACCATCAAGAATGACCATAAATCAAATAATTGCAACTGTT 201743 || | |||||| || ||| ||||| | ||||| || |||| | |||| | || Sbjct 9585 ATTGTGAATCCACATGCTATTCCATCCCGTATGACTATTGGTCAACTGATTGAGTGTATT 9644 Query 201744 ATGGGTAAA 201752 ||||||||| Sbjct 9645 ATGGGTAAA 9653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655070318591000